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Propagate resources to ingest_h5ad node #669

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merged 3 commits into from
Oct 15, 2024

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sgillies
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@sgillies sgillies commented Oct 14, 2024

Take 2: solve the resources propagation problem like VCF does. Instead of #664.

Sorry about the churn @johnkerl, @gspowley, @ktsitsi. How about this less risky approach proven in VCF? I'll make the corresponding PR for our 1-click UI.

@sgillies sgillies self-assigned this Oct 14, 2024
@sgillies sgillies changed the title Take 2: solve the resources propagation problem like VCF does. Propagate resources to ingest_h5ad node Oct 14, 2024
@sgillies sgillies marked this pull request as ready for review October 14, 2024 21:52
@ktsitsi
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ktsitsi commented Oct 15, 2024

Will we need a carry_along for bioimg too?

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@ktsitsi I honestly don't 100% understand why we're doing carry_along here. If you haven't noticed you need it for bio imaging ingestion, then I don't think you need it.

@sgillies sgillies merged commit bed675f into main Oct 15, 2024
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@sgillies sgillies deleted the sg/sc-55399/soma-ingest-resources branch October 15, 2024 22:16
sgillies added a commit that referenced this pull request Oct 16, 2024
* Take 2: solve the resources propagation problem like VCF does.

* Fix docstring

* Add code comment about resource propagation and application.
sgillies added a commit that referenced this pull request Oct 17, 2024
* Skip sub-folders and make pattern more useful

* Remove shouty debug log messages

* Add more logging.

* Test is_dir() before is_file()

* Propagate resources to ingest_h5ad node (#669)

* Take 2: solve the resources propagation problem like VCF does.

* Fix docstring

* Add code comment about resource propagation and application.
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4 participants