feat: enable YAML support for TinyDB

config.yml

@@ -2,9 +2,9 @@
 
 google_drive_data_path: "/Users/<USER>/Google Drive/My Drive/DATA/fitness-tracker-data"
 # google_drive_data_path: "/Users/<USER>/Library/CloudStorage/GoogleDrive-<EMAIL>/My Drive/DATA/fitness-tracker-data"
-real_workout_database: "<GOOGLE_DRIVE_DATA_PATH>/<ATHLETE>/db.json"
+real_workout_database: "<GOOGLE_DRIVE_DATA_PATH>/<ATHLETE>/db.yml"  # "<GOOGLE_DRIVE_DATA_PATH>/<ATHLETE>/db.json"
 real_disciplines_database: "<GOOGLE_DRIVE_DATA_PATH>/<ATHLETE>/real_disciplines.json"
-simulated_workout_database: "<GOOGLE_DRIVE_DATA_PATH>/sim_db.json"
+simulated_workout_database: "<GOOGLE_DRIVE_DATA_PATH>/sim_db.yml"  # "<GOOGLE_DRIVE_DATA_PATH>/sim_db.json"
 real_weight_table: "weight_training_log"
 real_disciplines_table: "disciplines_log"
 simulated_weight_table: "weight_training_log"

src/helpers/custom_storage.py

@@ -0,0 +1,27 @@
+import yaml  # type: ignore
+
+from tinydb import TinyDB  # type: ignore
+
+
+class YAMLStorage(Storage):
+    def __init__(self, filename):
+        self.filename = filename
+
+    def read(self):
+        with open(self.filename) as handle:
+            try:
+                data = yaml.safe_load(handle.read())
+                return data
+            except yaml.YAMLError:
+                return None
+
+    def write(self, data):
+        with open(self.filename, 'w+') as handle:
+            yaml.dump(data, handle)
+
+    def close(self):
+        pass
+
+
+if __name__ == "__main__":
+    db = TinyDB('db.yml', storage=YAMLStorage)

src/helpers/json_to_yaml.py

@@ -0,0 +1,18 @@
+import json
+import yaml
+
+
+def json_to_yaml(in_file: str) -> None:
+    """Create YAML file from JSON file, without sorting keys alphabetically.
+
+    :param in_file: absolute path to JSON file
+    :type in_file: str
+    """
+
+    with open(in_file, 'r') as rf, open(in_file.replace('json', 'yml'), "w") as wf:
+        yaml.dump(json.load(rf), wf, sort_keys=False)
+
+
+if __name__ == "__main__":
+    in_file = "/Users/gustavcollinrasmussen/Library/CloudStorage/[email protected]/My Drive/DATA/fitness-tracker-data/gustav_rasmussen/log_archive/JSON/2023/June/test.json"
+    json_to_yaml(in_file)

src/helpers/set_db_and_table.py

@@ -12,6 +12,8 @@
 
 from tinydb import TinyDB  # type: ignore
 
+from custom_storage import YAMLStorage
+
 
 def set_db_and_table(
     datatype,
@@ -56,14 +58,16 @@ def set_db_and_table(
             DATA["real_workout_database"]
             .replace("<ATHLETE>", athlete)
             .replace("<USER>", user)
-            .replace("<EMAIL>", email)
+            .replace("<EMAIL>", email),
+            storage=YAMLStorage
         )
         if datatype == "real"
         else TinyDB(
             DATA["simulated_workout_database"],
-            sort_keys=True,
-            indent=4,
-            separators=(",", ": "),
+            storage=YAMLStorage
+            # sort_keys=True,
+            # indent=4,
+            # separators=(",", ": "),
         )
     )
     table = (

src/orchestration/real_flow.sh

@@ -5,7 +5,7 @@
 # Author: Gustav Collin Rasmussen
 # Purpose: BASH workflow that inserts data in database.
 
-WORKOUT_DATE=$(date +%F)  # '2023-01-19'  # 2022-03-02,2022-03-03
+WORKOUT_DATE='2023-06-23'  # $(date +%F)  # '2023-01-19'  # 2022-03-02,2022-03-03
 # TRAINING_PROGRAM='nfp'  # 'gvt'
 
 # --workout_number 2
@@ -14,27 +14,27 @@ if ! python3 ./src/CRUD/insert.py --datatype real --dates "$WORKOUT_DATE"; then
     exit 1
 fi
 
-echo "Data inserted in database. Preparing figures..."
+# echo "Data inserted in database. Preparing figures..."
 
-if ! python3 ./src/combined_metrics/combined_metrics.py; then
-    echo "Error: Failed to prepare figures."
-    exit 1
-fi
+# if ! python3 ./src/combined_metrics/combined_metrics.py; then
+#     echo "Error: Failed to prepare figures."
+#     exit 1
+# fi
 
 # python3 src/model/plot_model.py --datatype real --pgm $TRAINING_PROGRAM
 
-open_images() {
-  open ./img/workout_frequency.png
-  open ./img/workout_duration.png
+# open_images() {
+#   open ./img/workout_frequency.png
+#   open ./img/workout_duration.png
   # open img/real_fitted_data_squat_${TRAINING_PROGRAM}.png
   # open img/real_fitted_data_barbell_bench_press_${TRAINING_PROGRAM}.png
   # open img/real_fitted_data_squat_splines.png
   # open img/real_fitted_data_deadlift_splines.png
   # open img/real_fitted_data_seated_row_splines.png
   # open img/real_fitted_data_barbell_bench_press_splines.png
-}
+# }
 
-if ! open_images; then
-    echo "Error: Failed to open images."
-    exit 1
-fi
+# if ! open_images; then
+#     echo "Error: Failed to open images."
+#     exit 1
+# fi