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selecting disparity metrics vignette
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134 changes: 134 additions & 0 deletions inst/vignettes/references.bib
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@article{dispRity,
author = {Guillerme, Thomas},
title = {{dispRity: A modular R package for measuring disparity}},
journal = {Methods in Ecology and Evolution},
volume = {9},
number = {7},
pages = {1755-1763},
keywords = {disparity, disparity-through-time, ecology, multidimensionality, ordination, palaeobiology},
doi = {10.1111/2041-210X.13022},
url = {https://besjournals.onlinelibrary.wiley.com/doi/abs/10.1111/2041-210X.13022},
year = {2018}
}
@article{beck2014,
author = {Robin M. D. Beck and Michael S. Y. Lee },
title = {Ancient dates or accelerated rates? Morphological clocks and the antiquity of placental mammals},
journal = {Proceedings of the Royal Society B: Biological Sciences},
volume = {281},
number = {1793},
pages = {20141278},
year = {2014},
doi = {10.1098/rspb.2014.1278},
URL = {https://royalsocietypublishing.org/doi/abs/10.1098/rspb.2014.1278},
eprint = {https://royalsocietypublishing.org/doi/pdf/10.1098/rspb.2014.1278}
}

@article{marcy2016,
title={Getting a head in hard soils: convergent skull evolution and divergent allometric patterns explain shape variation in a highly diverse genus of pocket gophers (Thomomys)},
author={Marcy, Ariel E and Hadly, Elizabeth A and Sherratt, Emma and Garland, Kathleen and Weisbecker, Vera},
journal={BMC evolutionary biology},
volume={16},
number={1},
pages={207},
year={2016},
publisher={BioMed Central}
}

@article{wright2017,
Author = {Wright, David F. },
Da = {2017/10/23},
Doi = {10.1038/s41598-017-13979-9},
Id = {Wright2017},
Isbn = {2045-2322},
Journal = {Scientific Reports},
Number = {1},
Pages = {13745},
Title = {Phenotypic Innovation and Adaptive Constraints in the Evolutionary Radiation of Palaeozoic Crinoids},
Ty = {JOUR},
Url = {https://doi.org/10.1038/s41598-017-13979-9},
Volume = {7},
Year = {2017}
}


@article{jones2015,
author = {Jones, Natalie T. and Germain, Rachel M. and Grainger, Tess N. and Hall, Aaron M. and Baldwin, Lyn and Gilbert, Benjamin},
title = {Dispersal mode mediates the effect of patch size and patch connectivity on metacommunity diversity},
journal = {Journal of Ecology},
volume = {103},
number = {4},
pages = {935-944},
keywords = {animal-dispersed seeds, aspen stands, connectivity, diffuse boundaries, dispersal syndrome, metapopulation, plant diversity, species richness},
doi = {10.1111/1365-2745.12405},
url = {https://besjournals.onlinelibrary.wiley.com/doi/abs/10.1111/1365-2745.12405},
eprint = {https://besjournals.onlinelibrary.wiley.com/doi/pdf/10.1111/1365-2745.12405},
year = {2015}
}


@article{hopkins2016,
title={Non-linear ontogenetic shape change in Cryptolithus tesselatus (Trilobita) using three-dimensional geometric morphometrics},
author={Melanie Hopkins and Kirk Pearson},
journal={Palaeontologia Electronica},
volume={19},
number={3},
pages={1--54},
year={2016},
publisher={Paleontological Society}
}


@article{healy2019,
title={Animal life history is shaped by the pace of life and the distribution of age-specific mortality and reproduction},
author={Healy, Kevin and Ezard, Thomas H. G. and Jones, Owen R. and Salguero-G'{o}mez, Roberto and Buckley, Yvonne M.},
journal={Nature Ecology \& Evolution},
volume={2397-334X},
year={2019},
doi={https://doi.org/10.1038/s41559-019-0938-7}
}

@article{bat2015,
author = {Cardoso, Pedro and Rigal, François and Carvalho, José C.},
title = {BAT – Biodiversity Assessment Tools, an R package for the measurement and estimation of alpha and beta taxon, phylogenetic and functional diversity},
journal = {Methods in Ecology and Evolution},
volume = {6},
number = {2},
pages = {232-236},
keywords = {accumulation curves, biodiversity estimation, diversity partition, extrapolation, nonparametric estimators, sampling bias},
doi = {10.1111/2041-210X.12310},
url = {https://besjournals.onlinelibrary.wiley.com/doi/abs/10.1111/2041-210X.12310},
eprint = {https://besjournals.onlinelibrary.wiley.com/doi/pdf/10.1111/2041-210X.12310},
year = {2015}
}


@article{guillerme2024,
title={The what, how and why of trait-based analyses in ecology},
author={Guillerme, Thomas and Cardoso, Pedro and J{\o}rgensen, Maria Wagner and Mammola, Stefano and Matthews, Thomas J},
journal={bioRxiv},
pages={2024--06},
year={2024},
publisher={Cold Spring Harbor Laboratory}
}

@article{mammola2021concepts,
title={Concepts and applications in functional diversity},
author={Mammola, Stefano and Carmona, Carlos P and Guillerme, Thomas and Cardoso, Pedro},
journal={Functional Ecology},
volume={35},
number={9},
pages={1869--1885},
year={2021},
publisher={Wiley Online Library}
}

@article{guillerme2020,
title={Shifting spaces: Which disparity or dissimilarity measurement best summarize occupancy in multidimensional spaces?},
author={Guillerme, Thomas and Puttick, Mark N and Marcy, Ariel E and Weisbecker, Vera},
journal={Ecology and evolution},
volume={10},
number={14},
pages={7261--7275},
year={2020},
publisher={Wiley Online Library}
}
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