squashme: use micromamba to install conda

SwissDataScienceCenter · Nov 25, 2024 · 68364cb · 68364cb
1 parent c49cb93
commit 68364cb
Show file tree

Hide file tree

Showing 2 changed files with 26 additions and 14 deletions.
diff --git a/.github/workflows/build-and-push-to-docker.yml b/.github/workflows/build-and-push-to-docker.yml
@@ -756,10 +756,15 @@ jobs:
       fail-fast: true
       matrix:
         include:
-          - CONDA_VERSION: 24.9.2-0
+          - PYTHON_VERSION: 3.12.7
             BASE_IMAGE_TAG: debian
-          - CONDA_VERSION: latest
+            LATEST: true
+          - PYTHON_VERSION: 3.11.10
+            BASE_IMAGE_TAG: debian
+            LATEST: true
+          - PYTHON_VERSION: 3.10.15
             BASE_IMAGE_TAG: debian
+            LATEST: true
     steps:
       - name: Docker Login
         uses: docker/login-action@v3
@@ -781,11 +786,11 @@ jobs:
         id: meta
         uses: docker/metadata-action@v5
         with:
-          images: ${{ env.DOCKER_PREFIX }}-vscode-conda
+          images: ${{ env.DOCKER_PREFIX }}-vscode-python
           tags: |
-            type=sha,prefix=${{ matrix.CONDA_VERSION }}-
-            type=semver,pattern={{version}},prefix=${{ matrix.CONDA_VERSION }}-
-            type=raw,value=latest,enable=${{ github.ref == 'refs/heads/main' && matrix.CONDA_VERSION == 'latest' }}
+            type=sha,prefix=py-${{ matrix.PYTHON_VERSION }}-
+            type=semver,pattern={{version}},prefix=py-${{ matrix.PYTHON_VERSION }}-
+            type=raw,value=latest,enable=${{ github.ref == 'refs/heads/main' && matrix.LATEST }}
       - name: Build and export
         uses: docker/build-push-action@v6
         with:
@@ -906,8 +911,8 @@ jobs:
         with:
           images: ${{ env.DOCKER_PREFIX }}-vscode-r
           tags: |
-            type=sha,prefix=${{ matrix.R_VERSION }}-
-            type=semver,pattern={{version}},prefix=${{ matrix.R_VERSION }}-
+            type=sha,prefix=r-${{ matrix.R_VERSION }}-
+            type=semver,pattern={{version}},prefix=r-${{ matrix.R_VERSION }}-
             type=raw,value=latest,enable=${{ github.ref == 'refs/heads/main' && matrix.LATEST }}
       - name: Build and export
         uses: docker/build-push-action@v6

diff --git a/docker/vscode/conda.Dockerfile b/docker/vscode/conda.Dockerfile
@@ -1,20 +1,27 @@
 ARG BASE_IMAGE=renku/renkulab-vscode:latest
 FROM $BASE_IMAGE
-ARG MINIFORGE_VERSION=24.9.2-0
-ARG OS=Linux
-ARG ARCH=x86_64
+ARG MICROMAMBA_VERSION=2.0.2-2
+ARG MAMBA_VERSION=1.5.9
+ARG CONDA_VERSION=24.9.2
+ARG PYTHON_VERSION=3.12.7
+ARG OS=linux
+ARG ARCH=64
 ARG SESSION_USER=vscode
 ARG WORKDIR=/home/${SESSION_USER}/work
 ARG VENVS_PATH=${WORKDIR}/.venvs
-ENV VENVS_PATH=${VENVS_PATH}
+ENV __VENVS_PATH__=${VENVS_PATH}
+ENV __PYTHON_VERSION__=${PYTHON_VERSION}
+ENV __MAMBA_VERSION__=${MAMBA_VERSION}
+ENV __CONDA_VERSION__=${CONDA_VERSION}
 SHELL [ "/bin/bash", "-c", "-o", "pipefail" ]
 USER root
 RUN apt-get update && \
 	apt-get install -y curl --no-install-recommends && \
-	curl -L "https://github.com/conda-forge/miniforge/releases/download/${MINIFORGE_VERSION}/Miniforge3-${OS}-${ARCH}.sh" -o /install.sh && \
+	curl -L "https://github.com/mamba-org/micromamba-releases/releases/download/${MICROMAMBA_VERSION}/micromamba-${OS}-${ARCH}" -o /usr/local/bin/micromamba && \
+	chmod a+x /usr/local/bin/micromamba && \
 	rm -rf /var/lib/apt/lists/*
 
 USER ${SESSION_USER}
 WORKDIR ${WORKDIR}
 ENTRYPOINT ["tini", "--", "sh", "-c"]
-CMD ["bash /install.sh -b -u -p ${VENVS_PATH} && ${VENVS_PATH}/bin/conda init && bash /entrypoint.sh"]
+CMD ["set -ex && micromamba install --yes --root-prefix=${__VENVS_PATH__} --prefix=${__VENVS_PATH__} python=${__PYTHON_VERSION__} mamba=${__MAMBA_VERSION__} conda=${__CONDA_VERSION__} && ${__VENVS_PATH__}/bin/mamba init && ${__VENVS_PATH__}/bin/conda config --add channels conda-forge && ${__VENVS_PATH__}/bin/conda config --set channel_priority strict && bash /entrypoint.sh"]