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| # define build arguments | ||
| ARG RENKU_BASE=renku/renkulab-py:latest | ||
| ARG BASE_IMAGE=mathworks/matlab:r2024a | ||
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| # define base images | ||
| FROM $RENKU_BASE as renku_base | ||
| FROM $BASE_IMAGE | ||
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| LABEL maintainer="Swiss Data Science Center <[email protected]>" | ||
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| USER root | ||
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| ENV NB_USER matlab | ||
| ENV NB_UID 1000 | ||
| ENV NB_GID 100 | ||
| ENV VENV_DIR /srv/venv | ||
| ENV HOME /home/${NB_USER} | ||
| ENV SHELL bash | ||
| ENV CONDA_PATH /opt/conda | ||
| SHELL [ "/bin/bash", "-c", "-o", "pipefail" ] | ||
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| # prepend conda and local/bin to PATH | ||
| ENV PATH ${HOME}/.local/bin:${CONDA_PATH}/bin:${HOME}/.renku/bin:$PATH | ||
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| # Add Tini | ||
| ENV TINI_VERSION v0.18.0 | ||
| ADD https://github.com/krallin/tini/releases/download/${TINI_VERSION}/tini /tini | ||
| RUN chmod +x /tini && ln -s /tini /usr/bin/ | ||
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| # install dependencies | ||
| RUN apt-get update --fix-missing && \ | ||
| apt-get install -yq --no-install-recommends \ | ||
| bzip2 \ | ||
| ca-certificates \ | ||
| curl \ | ||
| git \ | ||
| gpg-agent \ | ||
| rclone \ | ||
| vim && \ | ||
| apt-get purge && \ | ||
| apt-get clean && \ | ||
| apt-get autoremove --yes && \ | ||
| rm -rf /var/lib/apt/lists/* && \ | ||
| curl -L -s https://github.com/git-lfs/git-lfs/releases/download/v3.3.0/git-lfs-linux-"$(dpkg --print-architecture)"-v3.3.0.tar.gz -o /tmp/git-lfs-linux-"$(dpkg --print-architecture)"-v3.3.0.tar.gz && \ | ||
| tar -zxvf /tmp/git-lfs-linux-"$(dpkg --print-architecture)"-v3.3.0.tar.gz -C /tmp && \ | ||
| /tmp/git-lfs-3.3.0/install.sh && \ | ||
| rm -rf /tmp/git-lfs* | ||
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| # inject the renku-jupyter stack | ||
| COPY --from=renku_base /opt/conda /opt/conda | ||
| COPY --from=renku_base --chown=matlab:matlab /usr/local/bin/ /usr/local/bin/ | ||
| COPY --from=renku_base --chown=matlab:matlab /home/jovyan/ /home/matlab/ | ||
| COPY --from=renku_base /entrypoint.sh /entrypoint.sh | ||
| COPY --from=renku_base /renku/bashrc /renku/bashrc | ||
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| # set permissions of the R library directory to be editable by NB_USER | ||
| RUN chown 1000:100 /opt/conda && \ | ||
| # this hack lets some of the setup from the base renku image work here | ||
| ln -s /home/${NB_USER} /home/jovyan | ||
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| USER ${NB_USER} | ||
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| # set up conda in the NB_USER environment | ||
| RUN echo ". ${CONDA_PATH}/etc/profile.d/conda.sh" >> ~/.bashrc && \ | ||
| echo "conda activate base" >> ~/.bashrc && \ | ||
| cat /renku/bashrc >> $HOME/.bashrc && \ | ||
| echo "source ~/.bashrc" >> ~/.bash_profile | ||
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| RUN pip install --no-cache-dir "jupyter-matlab-proxy" | ||
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| ENTRYPOINT [ "/tini", "--", "/entrypoint.sh" ] | ||
| CMD [ "jupyter", "server", "--ip", "0.0.0.0" ] | ||
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| WORKDIR ${HOME} |