Skip to content
New issue

Have a question about this project? Sign up for a free GitHub account to open an issue and contact its maintainers and the community.

By clicking “Sign up for GitHub”, you agree to our terms of service and privacy statement. We’ll occasionally send you account related emails.

Already on GitHub? Sign in to your account

chore: add workflow file template #157

Merged
merged 2 commits into from
Jan 26, 2023
Merged
Show file tree
Hide file tree
Changes from all commits
Commits
File filter

Filter by extension

Filter by extension

Conversations
Failed to load comments.
Loading
Jump to
Jump to file
Failed to load files.
Loading
Diff view
Diff view
38 changes: 38 additions & 0 deletions R-minimal/workflows/my-workflow.yaml
Original file line number Diff line number Diff line change
@@ -0,0 +1,38 @@
# === Welcome to the template Renku Workflow file! ===
# You can use this file to encode in what order your data processing steps should be run,
# making it easier for you to run your workflow, and for others to understand it!

# === How to use this template ===
# Replace the script and data paths in the template below to match your analysis commands.
# Then, run `renku run my-workflow.yaml` in a terminal to execute the workflow!
# If you are working in a notebook, run `! renku run my-workflow.yaml` in a notebook cell.

# === Docs ===
# To learn much more about what you can do with the Renku Workflow File, see our docs:
# https://renku.readthedocs.io/en/stable/topic-guides/workflows/workflow-file.html

name: my-workflow
steps:
step-one:
command: python $n $my-script $input-data $output-data
inputs:
- my-script:
path: src/script.py
- input-data:
path: data/input/sample_data.csv
outputs:
- output-data:
path: data/output/results.csv
parameters:
- n:
prefix: -n
value: 10

# === Adding more steps ===
# You can add as many steps as you want to your workflow by copy and pasting the step template above
# TIP: To run just one step from a workflow, simply add the step name to the command, like this:
# `renku run my-workflow.yaml make-plot`
# make-plot:
# command: python $another-script $output-data $my-plot
# ...

38 changes: 38 additions & 0 deletions bioc-minimal/workflows/my-workflow.yaml
Original file line number Diff line number Diff line change
@@ -0,0 +1,38 @@
# === Welcome to the template Renku Workflow file! ===
# You can use this file to encode in what order your data processing steps should be run,
# making it easier for you to run your workflow, and for others to understand it!

# === How to use this template ===
# Replace the script and data paths in the template below to match your analysis commands.
# Then, run `renku run my-workflow.yaml` in a terminal to execute the workflow!
# If you are working in a notebook, run `! renku run my-workflow.yaml` in a notebook cell.

# === Docs ===
# To learn much more about what you can do with the Renku Workflow File, see our docs:
# https://renku.readthedocs.io/en/stable/topic-guides/workflows/workflow-file.html

name: my-workflow
steps:
step-one:
command: python $n $my-script $input-data $output-data
inputs:
- my-script:
path: src/script.py
- input-data:
path: data/input/sample_data.csv
outputs:
- output-data:
path: data/output/results.csv
parameters:
- n:
prefix: -n
value: 10

# === Adding more steps ===
# You can add as many steps as you want to your workflow by copy and pasting the step template above
# TIP: To run just one step from a workflow, simply add the step name to the command, like this:
# `renku run my-workflow.yaml make-plot`
# make-plot:
# command: python $another-script $output-data $my-plot
# ...

38 changes: 38 additions & 0 deletions julia-minimal/workflows/my-workflow.yaml
Original file line number Diff line number Diff line change
@@ -0,0 +1,38 @@
# === Welcome to the template Renku Workflow file! ===
# You can use this file to encode in what order your data processing steps should be run,
# making it easier for you to run your workflow, and for others to understand it!

# === How to use this template ===
# Replace the script and data paths in the template below to match your analysis commands.
# Then, run `renku run my-workflow.yaml` in a terminal to execute the workflow!
# If you are working in a notebook, run `! renku run my-workflow.yaml` in a notebook cell.

# === Docs ===
# To learn much more about what you can do with the Renku Workflow File, see our docs:
# https://renku.readthedocs.io/en/stable/topic-guides/workflows/workflow-file.html

name: my-workflow
steps:
step-one:
command: python $n $my-script $input-data $output-data
inputs:
- my-script:
path: src/script.py
- input-data:
path: data/input/sample_data.csv
outputs:
- output-data:
path: data/output/results.csv
parameters:
- n:
prefix: -n
value: 10

# === Adding more steps ===
# You can add as many steps as you want to your workflow by copy and pasting the step template above
# TIP: To run just one step from a workflow, simply add the step name to the command, like this:
# `renku run my-workflow.yaml make-plot`
# make-plot:
# command: python $another-script $output-data $my-plot
# ...

38 changes: 38 additions & 0 deletions minimal/workflows/my-workflow.yaml
Original file line number Diff line number Diff line change
@@ -0,0 +1,38 @@
# === Welcome to the template Renku Workflow file! ===
# You can use this file to encode in what order your data processing steps should be run,
# making it easier for you to run your workflow, and for others to understand it!

# === How to use this template ===
# Replace the script and data paths in the template below to match your analysis commands.
# Then, run `renku run my-workflow.yaml` in a terminal to execute the workflow!
# If you are working in a notebook, run `! renku run my-workflow.yaml` in a notebook cell.

# === Docs ===
# To learn much more about what you can do with the Renku Workflow File, see our docs:
# https://renku.readthedocs.io/en/stable/topic-guides/workflows/workflow-file.html

name: my-workflow
steps:
step-one:
command: python $n $my-script $input-data $output-data
inputs:
- my-script:
path: src/script.py
- input-data:
path: data/input/sample_data.csv
outputs:
- output-data:
path: data/output/results.csv
parameters:
- n:
prefix: -n
value: 10

# === Adding more steps ===
# You can add as many steps as you want to your workflow by copy and pasting the step template above
# TIP: To run just one step from a workflow, simply add the step name to the command, like this:
# `renku run my-workflow.yaml make-plot`
# make-plot:
# command: python $another-script $output-data $my-plot
# ...

38 changes: 38 additions & 0 deletions python-minimal/workflows/my-workflow.yaml
Original file line number Diff line number Diff line change
@@ -0,0 +1,38 @@
# === Welcome to the template Renku Workflow file! ===
# You can use this file to encode in what order your data processing steps should be run,
# making it easier for you to run your workflow, and for others to understand it!

# === How to use this template ===
# Replace the script and data paths in the template below to match your analysis commands.
# Then, run `renku run my-workflow.yaml` in a terminal to execute the workflow!
# If you are working in a notebook, run `! renku run my-workflow.yaml` in a notebook cell.

# === Docs ===
# To learn much more about what you can do with the Renku Workflow File, see our docs:
# https://renku.readthedocs.io/en/stable/topic-guides/workflows/workflow-file.html

name: my-workflow
steps:
step-one:
command: python $n $my-script $input-data $output-data
inputs:
- my-script:
path: src/script.py
- input-data:
path: data/input/sample_data.csv
outputs:
- output-data:
path: data/output/results.csv
parameters:
- n:
prefix: -n
value: 10

# === Adding more steps ===
# You can add as many steps as you want to your workflow by copy and pasting the step template above
# TIP: To run just one step from a workflow, simply add the step name to the command, like this:
# `renku run my-workflow.yaml make-plot`
# make-plot:
# command: python $another-script $output-data $my-plot
# ...