chore(main): pre-release v1.0.0

[github-actions]

🤖 I have created a release beep boop

Pre-release v1.0.0 (2024-08-08)

Features

• a command to refresh widgets of dashboard, collections and geolocations (not those of molecules and organism) (2e97965)
• add assign identifiers command (174e96e)
• added approval functionality to the role Curator and modified ListReports page to only show records as per authorisation. (d02fa2e)
• added button for publishing the collection. (98d3ba4)
• added command to generate api docs (75e2121)
• added default sort and tags for report resource (9c3e22b)
• added docs and other command updates (2380fbf)
• added functionality to display the status of the collection (e14219b)
• added github actions (29a5c3f)
• added NPAtlas import script, annotations score species scoring updates, docker file updates to install bcmath (28c4ceb)
• added relationship managers for report resource as well as one for audits. (d2278a6)
• added search to landing page (757c5e1)
• added structure editor (ca53f30)
• added the feature to accept comma separated tags. (2193a8b)
• added view report functionality to allow user to view the report after receiving mail confirmation. (82f4a9a)
• added vitepress docs (b7fddc8)
• advanced filters are now available on molecules (69252cd)
• allow activation and deactivation of molecules (f704256)
• bug fixes and other updates (6772b7c)
• bulk activate and deactivate of molecules is now available (497727e)
• changed the name of the event ReportEdited to ReportStatusChanged so as to aggregate the listeners for a model using Even Subscriber feature of Laravel (02ba9b0)
• collections in the search page can also now show display images (c7658ed)
• created a ReportPolicy to fine tune authorisations (customisation is still pending) (89e4349)
• created a separate widget for molecules in the dashboard (18e57cb)
• created a view for collection and added widgets (c4d7282)
• created CitationsRelation manager for Reports resource. (0ea3d45)
• created dashboard widgets for all resources (709e21c)
• created geolocation and organism resources (294a25c)
• created geolocation and organism resources and their relation managers for molecule resource (c51050c)
• created molecule relation manger for collection resource, added functionality for processing molecules in entries table, and added forget the collection molecules count at the end of import (6130df4)
• created MoleculesRelation manager for Reports and gave a separate Grouping for Reports. (aa64222)
• created policies for the resources, and put in place error handling on the frontend for missing values in molecule attributes. (aa6b08d)
• created relationship managers for geolocation and organism (0cb7652)
• created Reports resource (a8e242e)
• created the models and added relationships for the reporting functionality (b4f4b77)
• created the relationship manager for Reports, improved the table for ReportResource, and changed report->status type to ENUM. (2bf3427)
• created the required tables for reporting functionality (a0c6ddd)
• created view page for geolocation and added widgets (be02cd8)
• created view page for molecule and added widgets (a5bc781)
• created view page for organism and added widgets (7562377)
• display images can be uploaded to collections (2894396)
• displays the counts of resources by the side (641ea96)
• displays tool tips for the report fields (041b1bd)
• displays various counts in the collection table and added two widgets in collection stats (698184c)
• doi fetching in citation (wip) (8f43650)
• enablde filament spatie tags (e50371b)
• enabled cache and various bug fixes (97f9acb)
• enabled REGAPP SSO (fb97420)
• enabled SEO meta tags, organisms search page and other small updates (caf2acb)
• enabled structure editor - paste from clipboard (58aeeab)
• entries import module added (WIP) (a4d289e)
• event for saving an edited report is created (c3abb8f)
• event subscriber is created for the model report, and created notification for report status changes. (5c49664)
• generated policies for geolocation and organism (35d1d1d)
• home page collection cards will now display images (1e6aac1)
• implemented advanced tables and various other minor updates (3afe3f7)
• implemented citations, collections, organisms rest controllers and corresponding resources (4b9e8ae)
• implemented REST API service and swagger documentation, migrated from l5-swagger to lomkit (bf20706)
• implemented social login, ui updates and bug fixes (428a201)
• implemented spotlight and various updates, bug fixes (d05d231)
• landing page updates (036eb3d)
• laravel version upgrade from 10 to 11 and the corresponding dependencies upgrade (911c979)
• new columns are made available and filters are tuned (6260958)
• new command to copy names from entries and add them to synonyms for all the molecules (4f1988a)
• new registrations can now provide additional data like orcid, username, affiliation, etc (31555c0)
• now users can add collections, molecules or citations while creating the report itself (022a4c3)
• now users have to provide a reason for deactivating molecules (07248d4)
• now users receive new mail after reporting (5f93e7c)
• panel dashboard refactoring (4ae8f18)
• part of previous commit (5fdc58d)
• pdf download is now available for user views (c2642e9)
• refactoring and other updates/bug fixes (0648b71)
• reporting of molecules can now be done from molecules table and restructure of the table for better user experience (9614fb0)
• scheduled a refresh of cache for dashboard widgets (d825bc3)
• search updates and other minor changes (4203ab2)
• setup a markdown notification and email template for report status changes. (93fc9cf)
• shows active and inactive molecules in separate views with advanced filters enabled (a98ac14)
• shows the related organisms in the relations in edit mode (8ebfb66)
• the new fileds in registrations are also now available in profile updation (2e1fe7f)
• updated logo (96715fc)
• updates import entry and various other updates (efaafbf)
• user views can now be exported in various spread sheet formats (710f0c4)
• users without a role now can only access reports that they created. And added a dispatch for ReportEdited event (0270a77)
• ux/ui updates, text changes and commands added (3b84e5d)
• various updates and bug fixes (9b3cac4)
• various ux/ui updates and other minor changes (822760b)
• working code - molecule card and other updates (4ba70e1)

Bug Fixes

• abbreviation correction (92e7e85)
• abbreviation correction for coconut (efe3d38)
• abbreviation of coconut is fixed (1e58f8e)
• add chembiosys about.blade.php (cc04cf9)
• add more button when synonyms are available and above certain count (3e1197c)
• added a csv column to reports table to avoid preloading in the form (191c605)
• added cache to welcome page (ceaa44b)
• added checks for the creation of report (28d01b3)
• added composer private repo install capabilities (00d4c22)
• added cookie consent, support bubble and other working code (7d14071)
• added css from vendor folders (a894fad)
• added local env variable to allow proper redirection (cee868e)
• added missing docker hub credentials (9c73fc5)
• added variety of checks to hide and/or edit fields in accordance with the operation on report resource form (2ac35ca)
• added view more button to compound details page and other minor improvements (18eddbe)
• adding full path (dd8a692)
• annotation score calc updates (9eb6684)
• cache and search filters update and bug fixes (fe82ab1)
• cache applied to collection resource widgets (18aba41)
• cannot access offset of type string on string bug fix (840404b)
• changed molecule entry filed to text area and formatting changes (c7c842e)
• class name "ImportSTOUTIUPACNames" update - build failure (eff9ac3)
• cleaned up spatie media remnants (a268a53)
• code refactoring and performance improvements (8743bab)
• composer_auth var added (4387da4)
• compound details page updates, search updates and other minor changes (e53ddb7)
• compound details page, header link updates and annotation score code formatting (ad443a0)
• created one to many relation between the models User and Report (7bd2fdf)
• dash widgets molecules count (3fa7a8d)
• default user avatar is now generated using first and last names (c9fd00c)
• docker build issue fix (0bed1cb)
• enabled edits of citations. (7837d5d)
• enabled lazy loading in the welcome page (57be610)
• enabled tautomeric standardization, various import scripts and other updates (14b005a)
• enforcing url https redirect (b0fdbc9)
• filament route missing issue fix and composer update changes (edf2dbd)
• file path missing bug fix (00aec98)
• formatting updates (8d836dc)
• formatting updates and other changes (672f8fc)
• gave view access to normal users for geolocations and organisms resources (aa4c86c)
• header issue and other minor css changes (61606ad)
• if the doi fetch fails to get data from the apis, it will also search coconut db (4b7eeeb)
• import preset path fix (0cd86e9)
• importer updates and formatting changes (d8bd65e)
• installed predis/predis composer package and updated google cluster zone details (5ce608b)
• made audits as the default tab for the report view after clicking on the button in the mail for status changes and removed unnecessary details in the mail templates. (df4a61d)
• malformed auth.json bug fix (a669d6e)
• merge conflicts from development (208e980)
• minor molecule card updates (2ce5b9d)
• missing file in the path bug fix (d4c856c)
• missing files bug fix (d394a55)
• missing index.css file bug fix (b48fa4a)
• molecule details page update, iupac names import command added, header changes (26fa0b7)
• more lazy loading optimisations (9ebdd45)
• more optimisation (6a19b77)
• nginx docker fail bug fix (cddf6ce)
• now report relations are shown according to the report type (492d700)
• OCL loading issue fix (ac18255)
• parameterised the molecule in the frontend livewire view (48edf84)
• performance improvement for dashboard widgets using raw queries. (9ae31bf)
• performance improvement for widgets in collections, geolocations, molecules, organisms (6c00b12)
• queries in collection and geolocation stats inline with app cache refresh (9506316)
• query switched to unique cannonical smiles, other bug fixes and updates (319c64a)
• recent molecules filtering updates (465672a)
• removed avatar field for collections (259846e)
• removed tailwind config import and reverted docker file updates (0b7176e)
• replaced the column molecular_weight with exact_molecular_weight and added a helper tool tip to mention the source of calculation (b880c46)
• replaced the delete functionality with detach functionality for CollectionsResource manager of Reports (8402f5c)
• resolved #117 issue and default query update (c6d24fc)
• resolved #6 (3040e20)
• resolved base image issue (62b71b0)
• resolved molecule route issue (2c451b0)
• search is now limited to specific columns and new formatting changes for php class instantiation (bf93081)
• search updates (f4d76be)
• stream lined the form filed for molecules (f7f6b4a)
• synonyms null check added (2792020)
• tailwind config preset missing bug fix (0535511)
• text search ordering added (0ebb9b9)
• turned the molecule query into raw and added info messages (96369f7)
• two new commands for deduplicating the synonyms and updating the name with the first synonym where name is null (b1cad31)
• undone few previous changes and fine tuned the DOI fetching and displaying the fields. (cc281d2)
• updated about page (3224bde)
• updated download page, removed bg pattern and other minor updates (68c7979)
• updated favicon (221b67f)
• updated landing page with search and other options, minor query updates (f6d2402)
• updated molecule card and added counts to the molecules table (4752a2e)
• updated reference id (8b243eb)
• updated smiles search with sort order (beba591)
• updated the policies to allow user to create new reports and attach molecules, collections or citations to the report (017cf77)
• user access (32af907)
• various bug fixes and ux/ui improvements (30768b3)
• various landing page updates, search sorting implementation and other minor updates (f0ead1b)
• various updates (c49023e)

Miscellaneous Chores

• added icons for geolocations and organisms, and ran pint (1c64042)
• formatting changes (e53ff25)
• formatting changes (9efa0e7)
• formatting changes (bdb8348)
• formatting updates (5104dbf)
• nullified organism_parts and locations in the pivot tables for now. (3e43bea)
• queries inline with app widget cache refresh (1bca5a6)
• ran pint (f400f08)
• ran pint and deleted comments (0a2bb27)
• ran pint and deleted comments (c053994)
• removed unnecessary comments (8d3bbad)
• updated the citations (1854a4d)
• updated using composer (250819b)

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