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v1.6.4
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@Starlitnightly Starlitnightly released this 16 Jul 19:17
· 165 commits to master since this release
v1.6.4
ac76a0a

Bulk Module

  • Optimised pyGSEA's geneset_plot visualisation of coordinate effects
  • Fixed an error of pyTCGA.survival_analysis when the matrix is sparse. #62, #68, #95
  • Added tqdm to visualize the process of pyTCGA.survial_analysis_all
  • Fixed an error of data_drop_duplicates_index with remove duplicate indexes to retain only the highest expressed genes #45
  • Added geneset_plot_multi in ov.bulk to visualize the multi results of enrichment. #103

Single Module

  • Added mellon_density to calculate the cell density. #103

PP Module

  • Fixed an error of ov.pp.pca when pcs smaller than 13. #102
  • Added COMPOSITE in ov.pp.qc's method to predicted doublet cells. #103
  • Added species argument in score_genes_cell_cycle to calculate the cell phase without gene manual input
Assets 4
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