Adds Freyja version 1.5.0

[erinyoung]

There's a new version of Freyja!

• adds --depthcutoff features to account for available genome coverage, de-aliasing, and assignment of MRCAs
• enables both true and relaxed MRCA assignment
• incorporates collapsed MRCAs into summarization and plotting
• some small speed improvements
• option to set variants threshold above 0 for space constraints

I have put together a Dockerfile for version 1.5.0 and updated the corresponding GA workflow.

The only thing I changed in the Dockerfile was the version ARG:

$ diff freyja/1.4.9/Dockerfile freyja/1.5.0/Dockerfile 
5c5
< ARG FREYJA_SOFTWARE_VERSION="1.4.9"
---
> ARG FREYJA_SOFTWARE_VERSION="1.5.0"

The github action file has changed substantially in that

1. Commented out steps have been deleted
2. Pushing to repositories has been combined into one step
   2a. Pushing now includes overwriting the 'latest' tag

Pull Request (PR) checklist:

• Include a description of what is in this pull request in this message.
• The dockerfile successfully builds to a test target for the user creating the PR. (i.e. docker build --tag samtools:1.15test --target test docker-builds/samtools/1.15 )
• Directory structure as name of the tool in lower case with special characters removed with a subdirectory of the version number (i.e. spades/3.12.0/Dockerfile)
  • (optional) All test files are located in same directory as the Dockerfile (i.e. shigatyper/2.0.1/test.sh)
• Create a simple container-specific README.md in the same directory as the Dockerfile (i.e. spades/3.12.0/README.md)
  • If this README is longer than 30 lines, there is an explanation as to why more detail was needed
• Dockerfile includes the recommended LABELS
• Main README.md has been updated to include the tool and/or version of the dockerfile(s) in this PR
• Program_Licenses.md contains the tool(s) used in this PR and has been updated for any missing

[Kincekara]

Thank you for putting all these together!
You can check the image deployment from here: https://github.com/StaPH-B/docker-builds/actions/runs/8375236670.