adds Freyja 1.4.8

[kapsakcj]

PR adds a dockerfile for freyja v1.4.8.

Apologies to Erin, I know she contributed a PR to build these automatically with a github actions workflow 🙈 I'd prefer to get this docker image added manually before we attempt to use the GHActions workflow in PR #796

Changes from previous version's (1.4.7) dockerfile:

• updated base image & LABEL to mambaorg/micromamba:1.5.6 from v1.4.9 of micromamba
• dependencies installed via (bio)conda that were updated (via conda recipe change, I didn't update these myself)
  • biopython 1.81 ➡️ 1.82
  • matplotlib-base 3.7.2 ➡️ 3.8.2
  • pandas 2.0.3 ➡️ 2.1.4
  • samtools 1.17 ➡️ 1.19
  • scipy 1.11.1 ➡️ 1.11.4
  • usher 0.6.2 ➡️ 0.6.3
  • perhaps other versions changed, but these were the ones I noticed.

As long as the tests pass, I'm not too concerned about these dependency changes. Just wanted to note what has changed since the last freyja version.

Pull Request (PR) checklist:

• Include a description of what is in this pull request in this message.
• The dockerfile successfully builds to a test target for the user creating the PR. (i.e. docker build --tag samtools:1.15test --target test docker-builds/samtools/1.15 )
• Directory structure as name of the tool in lower case with special characters removed with a subdirectory of the version number (i.e. spades/3.12.0/Dockerfile)
  • (optional) All test files are located in same directory as the Dockerfile (i.e. shigatyper/2.0.1/test.sh)
• Create a simple container-specific README.md in the same directory as the Dockerfile (i.e. spades/3.12.0/README.md)
  • If this README is longer than 30 lines, there is an explanation as to why more detail was needed
• Dockerfile includes the recommended LABELS
• Main README.md has been updated to include the tool and/or version of the dockerfile(s) in this PR
• Program_Licenses.md contains the tool(s) used in this PR and has been updated for any missing

[kevinlibuit]

Builds great on my end and no issues with tests run locally.