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adding lrge version 0.1.3 #1124

Merged
merged 2 commits into from
Dec 18, 2024
Merged

adding lrge version 0.1.3 #1124

merged 2 commits into from
Dec 18, 2024

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erinyoung
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I tried out lrge, and I've found it to be useful to estimate the genome size of a bacteria from just the reads. It seems to be more accurate than jellyfish.

Pull Request (PR) checklist:

  • Include a description of what is in this pull request in this message.
  • The dockerfile successfully builds to a test target for the user creating the PR. (i.e. docker build --tag samtools:1.15test --target test docker-builds/samtools/1.15 )
  • Directory structure as name of the tool in lower case with special characters removed with a subdirectory of the version number (i.e. spades/3.12.0/Dockerfile)
    • (optional) All test files are located in same directory as the Dockerfile (i.e. shigatyper/2.0.1/test.sh)
  • Create a simple container-specific README.md in the same directory as the Dockerfile (i.e. spades/3.12.0/README.md)
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erinyoung and others added 2 commits December 11, 2024 19:39
clean up commented skani installation.
@Kincekara Kincekara merged commit 312f246 into StaPH-B:master Dec 18, 2024
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@Kincekara
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Thank you for your PR! I just removed the commented-out skani installation from the dockerfile.
You can check the image deployment here: https://github.com/StaPH-B/docker-builds/actions/runs/12396640562

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2 participants