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adds verkko v2.2 #1050

Merged
merged 2 commits into from
Sep 20, 2024
Merged

adds verkko v2.2 #1050

merged 2 commits into from
Sep 20, 2024

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Kincekara
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The new version includes various bugfixes and improvements. I updated the mamba image with the tool.

diff verkko/2.1/Dockerfile verkko/2.2/Dockerfile
1c1
< FROM mambaorg/micromamba:1.5.8 as app
---
> FROM mambaorg/micromamba:1.5.9 AS app
3c3
< ARG VERKKO_VER="2.1"
---
> ARG VERKKO_VER="2.2"
9c9
< LABEL base.image="mambaorg/micromamba:1.5.8"
---
> LABEL base.image="mambaorg/micromamba:1.5.9"
34c34
< FROM app as test
---
> FROM app AS test

Pull Request (PR) checklist:

  • Include a description of what is in this pull request in this message.
  • The dockerfile successfully builds to a test target for the user creating the PR. (i.e. docker build --tag samtools:1.15test --target test docker-builds/samtools/1.15 )
  • Directory structure as name of the tool in lower case with special characters removed with a subdirectory of the version number (i.e. spades/3.12.0/Dockerfile)
    • (optional) All test files are located in same directory as the Dockerfile (i.e. shigatyper/2.0.1/test.sh)
  • Create a simple container-specific README.md in the same directory as the Dockerfile (i.e. spades/3.12.0/README.md)
    • If this README is longer than 30 lines, there is an explanation as to why more detail was needed
  • Dockerfile includes the recommended LABELS
  • Main README.md has been updated to include the tool and/or version of the dockerfile(s) in this PR
  • Program_Licenses.md contains the tool(s) used in this PR and has been updated for any missing

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@erinyoung erinyoung left a comment

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Thank you for putting this together!

I have no changes to recommend.

I'm going to

  1. merge this PR
  2. deploy to 'staphb/verkko' on both quay.io and dockerhub
  3. use the tags '2.2' and 'latest'

@erinyoung erinyoung merged commit 5fcb1e6 into StaPH-B:master Sep 20, 2024
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@erinyoung
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You can check the status of the deploy here : https://github.com/StaPH-B/docker-builds/actions/runs/10967501422

@Kincekara Kincekara deleted the verkko branch October 1, 2024 18:39
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2 participants