Dragonflye (#856)

* adding dragonflye 1.1.2

* Removed Additional tools

* Update README.md

* Add polypolish version

* Update README.md

README.md

@@ -136,7 +136,7 @@ To learn more about the docker pull rate limits and the open source software pro
 | [cutshaw-report-env](https://hub.docker.com/r/staphb/cutshaw-report-env) <br/> [![docker pulls](https://badgen.net/docker/pulls/staphb/cutshaw-report-env)](https://hub.docker.com/r/staphb/cutshaw-report-env) | <ul><li>1.0.0</li></ul> | https://github.com/VADGS/CutShaw |
 | [datasets-sars-cov-2](https://github.com/CDCgov/datasets-sars-cov-2) <br/> [![docker pulls](https://badgen.net/docker/pulls/staphb/datasets-sars-cov-2)](https://hub.docker.com/r/staphb/datasets-sars-cov-2) | <ul><li>0.6.2</li><li>0.6.3</li><li>0.7.2</li></ul> | https://github.com/CDCgov/datasets-sars-cov-2 |
 | [dnaapler](https://hub.docker.com/r/staphb/dnaapler) <br/> [![docker pulls](https://badgen.net/docker/pulls/staphb/dnaapler)](https://hub.docker.com/r/staphb/dnaapler) | <ul><li>[0.1.0](dnaapler/0.1.0/)</li></ul> <ul><li>[0.4.0](dnaapler/0.4.0/)</li><li>[0.5.0](dnaapler/0.5.0/)</li><li>[0.5.1](dnaapler/0.5.1/)</li></ul> | https://github.com/gbouras13/dnaapler |
-| [dragonflye](https://hub.docker.com/r/staphb/dragonflye) <br/> [![docker pulls](https://badgen.net/docker/pulls/staphb/dragonflye)](https://hub.docker.com/r/staphb/dragonflye) | <ul><li>1.0.14</li><li>[1.1.1](dragonflye/1.1.1/)</li><li>[1.1.1](dragonflye/1.1.2/)</li></ul> | https://github.com/rpetit3/dragonflye |
+| [dragonflye](https://hub.docker.com/r/staphb/dragonflye) <br/> [![docker pulls](https://badgen.net/docker/pulls/staphb/dragonflye)](https://hub.docker.com/r/staphb/dragonflye) | <ul><li>[1.0.14](./dragonflye/1.0.14/)</li><li>[1.1.1](./dragonflye/1.1.1/)</li><li>[1.1.2](./dragonflye/1.1.2/)</li></ul> | https://github.com/rpetit3/dragonflye |
 | [Dr. PRG ](https://hub.docker.com/r/staphb/drprg) <br/> [![docker pulls](https://badgen.net/docker/pulls/staphb/drprg)](https://hub.docker.com/r/staphb/drprg) | <ul><li>[0.1.1](drprg/0.1.1/)</li></ul> | https://mbh.sh/drprg/ |
 | [DSK](https://hub.docker.com/r/staphb/dsk) <br/> [![docker pulls](https://badgen.net/docker/pulls/staphb/dsk)](https://hub.docker.com/r/staphb/dsk) | <ul><li>0.0.100</li></ul> | https://gatb.inria.fr/software/dsk/ |
 | [el_gato](https://hub.docker.com/r/staphb/elgato) <br/> [![docker pulls](https://badgen.net/docker/pulls/staphb/elgato)](https://hub.docker.com/r/staphb/elgato) | <ul><li>[1.15.2](./elgato/1.15.2)</li></ul> | https://github.com/appliedbinf/el_gato |

dragonflye/1.1.2/Dockerfile

@@ -6,7 +6,8 @@ USER root
 WORKDIR /
 
 # ARG variables only persist during build time 
-ARG DRAGONFLYE_VER="1.1.2"    
+ARG DRAGONFLYE_VER="1.1.2"
+ARG POLYPOLISH_VER="0.5.0"
 
 # metadata labels
 LABEL base.image="mambaorg/micromamba:1.4.4"
@@ -31,7 +32,7 @@ RUN apt-get update && apt-get install -y --no-install-recommends \
     apt-get autoclean && rm -rf /var/lib/apt/lists/*
 
 # create the conda environment; install dragonflye and dependencies based on bioconda package; cleanup conda garbage
-RUN micromamba install -n base -c conda-forge -c bioconda -c defaults -y dragonflye=${DRAGONFLYE_VER} && \
+RUN micromamba install -n base -c conda-forge -c bioconda -c defaults -y dragonflye=${DRAGONFLYE_VER} polypolish=${POLYPOLISH_VER} && \
     micromamba clean -a -y && \
     mkdir /data
 

dragonflye/1.1.2/README.md

@@ -1,6 +1,6 @@
 # dragonflye docker image
 
-Main tool : [dragonflye v1.1.1](https://github.com/rpetit3/dragonflye)
+Main tool : [dragonflye](https://github.com/rpetit3/dragonflye)
 
 > dragonflye: Assemble bacterial isolate genomes from Nanopore reads