Moving all dockerfiles into a "build-files" directory (#1119)

* made conditional to StaPH-B * moved files * renamed recipes to build-files
StaPH-B · Dec 27, 2024 · 2cd4a97 · 2cd4a97
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diff --git a/.github/workflows/update_freyja.yml b/.github/workflows/update_freyja.yml
@@ -15,6 +15,7 @@ run-name: Updating Freyja
 
 jobs:
   update:
+    if: github.repository == 'StaPH-B/docker-builds'
     runs-on: ubuntu-latest
     steps:    
       - name: pull repo

diff --git a/.github/workflows/update_mlst.yml b/.github/workflows/update_mlst.yml
@@ -15,6 +15,7 @@ run-name: Updating MLST
 
 jobs:
   update:
+    if: github.repository == 'StaPH-B/docker-builds'
     runs-on: ubuntu-latest
     steps:
 

diff --git a/abricate/0.8.13-db/Dockerfile → build-files/abricate/0.8.13-db/Dockerfile b/abricate/0.8.13-db/Dockerfile → build-files/abricate/0.8.13-db/Dockerfile
diff --git a/abricate/0.8.13/Dockerfile → build-files/abricate/0.8.13/Dockerfile b/abricate/0.8.13/Dockerfile → build-files/abricate/0.8.13/Dockerfile
diff --git a/abricate/0.8.13s/Dockerfile → build-files/abricate/0.8.13s/Dockerfile b/abricate/0.8.13s/Dockerfile → build-files/abricate/0.8.13s/Dockerfile
diff --git a/abricate/0.8.13s/README.md → build-files/abricate/0.8.13s/README.md b/abricate/0.8.13s/README.md → build-files/abricate/0.8.13s/README.md
diff --git a/abricate/0.8.7/Dockerfile → build-files/abricate/0.8.7/Dockerfile b/abricate/0.8.7/Dockerfile → build-files/abricate/0.8.7/Dockerfile
diff --git a/abricate/0.9.8/Dockerfile → build-files/abricate/0.9.8/Dockerfile b/abricate/0.9.8/Dockerfile → build-files/abricate/0.9.8/Dockerfile
diff --git a/abricate/1.0.0/Dockerfile → build-files/abricate/1.0.0/Dockerfile b/abricate/1.0.0/Dockerfile → build-files/abricate/1.0.0/Dockerfile
diff --git a/...-plasmid/AcinetobacterPlasmidTyping.fasta → ...-plasmid/AcinetobacterPlasmidTyping.fasta b/...-plasmid/AcinetobacterPlasmidTyping.fasta → ...-plasmid/AcinetobacterPlasmidTyping.fasta
diff --git a/abricate/1.0.1-Abaum-plasmid/Dockerfile → ...s/abricate/1.0.1-Abaum-plasmid/Dockerfile b/abricate/1.0.1-Abaum-plasmid/Dockerfile → ...s/abricate/1.0.1-Abaum-plasmid/Dockerfile
diff --git a/abricate/1.0.1-Abaum-plasmid/README.md → ...es/abricate/1.0.1-Abaum-plasmid/README.md b/abricate/1.0.1-Abaum-plasmid/README.md → ...es/abricate/1.0.1-Abaum-plasmid/README.md
diff --git a/abricate/1.0.1-insaflu-220727/Dockerfile → .../abricate/1.0.1-insaflu-220727/Dockerfile b/abricate/1.0.1-insaflu-220727/Dockerfile → .../abricate/1.0.1-insaflu-220727/Dockerfile
diff --git a/abricate/1.0.1-insaflu-220727/README.md → ...s/abricate/1.0.1-insaflu-220727/README.md b/abricate/1.0.1-insaflu-220727/README.md → ...s/abricate/1.0.1-insaflu-220727/README.md
diff --git a/....1-insaflu-220727/insaflu220727_sequences → ....1-insaflu-220727/insaflu220727_sequences b/....1-insaflu-220727/insaflu220727_sequences → ....1-insaflu-220727/insaflu220727_sequences
diff --git a/...27/tests/SRR10013255.irma.consensus.fasta → ...27/tests/SRR10013255.irma.consensus.fasta b/...27/tests/SRR10013255.irma.consensus.fasta → ...27/tests/SRR10013255.irma.consensus.fasta
diff --git a/abricate/1.0.1-vibrio-cholera/Dockerfile → .../abricate/1.0.1-vibrio-cholera/Dockerfile b/abricate/1.0.1-vibrio-cholera/Dockerfile → .../abricate/1.0.1-vibrio-cholera/Dockerfile
diff --git a/abricate/1.0.1-vibrio-cholera/README.md → ...s/abricate/1.0.1-vibrio-cholera/README.md b/abricate/1.0.1-vibrio-cholera/README.md → ...s/abricate/1.0.1-vibrio-cholera/README.md
diff --git a/.../1.0.1-vibrio-cholera/vibrio_v1.0.0.fasta → .../1.0.1-vibrio-cholera/vibrio_v1.0.0.fasta b/.../1.0.1-vibrio-cholera/vibrio_v1.0.0.fasta → .../1.0.1-vibrio-cholera/vibrio_v1.0.0.fasta
diff --git a/aci/1.4.20240116/Dockerfile → build-files/aci/1.4.20240116/Dockerfile b/aci/1.4.20240116/Dockerfile → build-files/aci/1.4.20240116/Dockerfile
diff --git a/aci/1.4.20240116/README.md → build-files/aci/1.4.20240116/README.md b/aci/1.4.20240116/README.md → build-files/aci/1.4.20240116/README.md
diff --git a/aniclustermap/1.3.0/Dockerfile → build-files/aniclustermap/1.3.0/Dockerfile b/aniclustermap/1.3.0/Dockerfile → build-files/aniclustermap/1.3.0/Dockerfile
diff --git a/aniclustermap/1.3.0/README.md → build-files/aniclustermap/1.3.0/README.md b/aniclustermap/1.3.0/README.md → build-files/aniclustermap/1.3.0/README.md
diff --git a/aniclustermap/1.4.0/Dockerfile → build-files/aniclustermap/1.4.0/Dockerfile b/aniclustermap/1.4.0/Dockerfile → build-files/aniclustermap/1.4.0/Dockerfile
diff --git a/aniclustermap/1.4.0/README.md → build-files/aniclustermap/1.4.0/README.md b/aniclustermap/1.4.0/README.md → build-files/aniclustermap/1.4.0/README.md
diff --git a/any2fasta/0.4.2/Dockerfile → build-files/any2fasta/0.4.2/Dockerfile b/any2fasta/0.4.2/Dockerfile → build-files/any2fasta/0.4.2/Dockerfile
diff --git a/any2fasta/0.4.2/README.md → build-files/any2fasta/0.4.2/README.md b/any2fasta/0.4.2/README.md → build-files/any2fasta/0.4.2/README.md
diff --git a/ariba/2.14.4/Dockerfile → build-files/ariba/2.14.4/Dockerfile b/ariba/2.14.4/Dockerfile → build-files/ariba/2.14.4/Dockerfile
diff --git a/ariba/2.14.6/Dockerfile → build-files/ariba/2.14.6/Dockerfile b/ariba/2.14.6/Dockerfile → build-files/ariba/2.14.6/Dockerfile
diff --git a/ariba/2.14.6/README.md → build-files/ariba/2.14.6/README.md b/ariba/2.14.6/README.md → build-files/ariba/2.14.6/README.md
diff --git a/ariba/2.14.7/Dockerfile → build-files/ariba/2.14.7/Dockerfile b/ariba/2.14.7/Dockerfile → build-files/ariba/2.14.7/Dockerfile
diff --git a/ariba/2.14.7/README.md → build-files/ariba/2.14.7/README.md b/ariba/2.14.7/README.md → build-files/ariba/2.14.7/README.md
diff --git a/artic-ncov2019-epi2me/0.3.10/Dockerfile → ...s/artic-ncov2019-epi2me/0.3.10/Dockerfile b/artic-ncov2019-epi2me/0.3.10/Dockerfile → ...s/artic-ncov2019-epi2me/0.3.10/Dockerfile
diff --git a/artic-ncov2019-medaka/Dockerfile → ...es/artic-ncov2019-medaka/1.1.0/Dockerfile b/artic-ncov2019-medaka/Dockerfile → ...es/artic-ncov2019-medaka/1.1.0/Dockerfile
diff --git a/artic-ncov2019-nanopolish/Dockerfile → ...rtic-ncov2019-nanopolish/1.1.0/Dockerfile b/artic-ncov2019-nanopolish/Dockerfile → ...rtic-ncov2019-nanopolish/1.1.0/Dockerfile
diff --git a/artic-ncov2019/1.3.0-medaka-1.4.3/Dockerfile → ...ic-ncov2019/1.3.0-medaka-1.4.3/Dockerfile b/artic-ncov2019/1.3.0-medaka-1.4.3/Dockerfile → ...ic-ncov2019/1.3.0-medaka-1.4.3/Dockerfile
diff --git a/artic-ncov2019/1.3.0/Dockerfile → build-files/artic-ncov2019/1.3.0/Dockerfile b/artic-ncov2019/1.3.0/Dockerfile → build-files/artic-ncov2019/1.3.0/Dockerfile
diff --git a/artic/1.2.4-1.11.1/Dockerfile → build-files/artic/1.2.4-1.11.1/Dockerfile b/artic/1.2.4-1.11.1/Dockerfile → build-files/artic/1.2.4-1.11.1/Dockerfile
diff --git a/artic/1.2.4-1.11.1/README.md → build-files/artic/1.2.4-1.11.1/README.md b/artic/1.2.4-1.11.1/README.md → build-files/artic/1.2.4-1.11.1/README.md
diff --git a/artic/1.2.4-1.12.0/Dockerfile → build-files/artic/1.2.4-1.12.0/Dockerfile b/artic/1.2.4-1.12.0/Dockerfile → build-files/artic/1.2.4-1.12.0/Dockerfile
diff --git a/artic/1.2.4-1.12.0/README.md → build-files/artic/1.2.4-1.12.0/README.md b/artic/1.2.4-1.12.0/README.md → build-files/artic/1.2.4-1.12.0/README.md
diff --git a/assembly_snptyper/0.1.1/Dockerfile → ...-files/assembly_snptyper/0.1.1/Dockerfile b/assembly_snptyper/0.1.1/Dockerfile → ...-files/assembly_snptyper/0.1.1/Dockerfile
diff --git a/assembly_snptyper/0.1.1/README.md → ...d-files/assembly_snptyper/0.1.1/README.md b/assembly_snptyper/0.1.1/README.md → ...d-files/assembly_snptyper/0.1.1/README.md
diff --git a/augur/16.0.3/Dockerfile → build-files/augur/16.0.3/Dockerfile b/augur/16.0.3/Dockerfile → build-files/augur/16.0.3/Dockerfile
diff --git a/augur/16.0.3/README.md → build-files/augur/16.0.3/README.md b/augur/16.0.3/README.md → build-files/augur/16.0.3/README.md
diff --git a/augur/24.2.2/Dockerfile → build-files/augur/24.2.2/Dockerfile b/augur/24.2.2/Dockerfile → build-files/augur/24.2.2/Dockerfile
diff --git a/augur/24.2.2/README.md → build-files/augur/24.2.2/README.md b/augur/24.2.2/README.md → build-files/augur/24.2.2/README.md
diff --git a/augur/24.2.3/Dockerfile → build-files/augur/24.2.3/Dockerfile b/augur/24.2.3/Dockerfile → build-files/augur/24.2.3/Dockerfile
diff --git a/augur/24.2.3/README.md → build-files/augur/24.2.3/README.md b/augur/24.2.3/README.md → build-files/augur/24.2.3/README.md
diff --git a/augur/24.3.0/Dockerfile → build-files/augur/24.3.0/Dockerfile b/augur/24.3.0/Dockerfile → build-files/augur/24.3.0/Dockerfile
diff --git a/augur/24.3.0/README.md → build-files/augur/24.3.0/README.md b/augur/24.3.0/README.md → build-files/augur/24.3.0/README.md
diff --git a/augur/24.4.0/Dockerfile → build-files/augur/24.4.0/Dockerfile b/augur/24.4.0/Dockerfile → build-files/augur/24.4.0/Dockerfile
diff --git a/augur/24.4.0/README.md → build-files/augur/24.4.0/README.md b/augur/24.4.0/README.md → build-files/augur/24.4.0/README.md
diff --git a/augur/26.0.0/Dockerfile → build-files/augur/26.0.0/Dockerfile b/augur/26.0.0/Dockerfile → build-files/augur/26.0.0/Dockerfile
diff --git a/augur/26.0.0/README.md → build-files/augur/26.0.0/README.md b/augur/26.0.0/README.md → build-files/augur/26.0.0/README.md
diff --git a/augur/6.3.0/Dockerfile → build-files/augur/6.3.0/Dockerfile b/augur/6.3.0/Dockerfile → build-files/augur/6.3.0/Dockerfile
diff --git a/augur/7.0.2/Dockerfile → build-files/augur/7.0.2/Dockerfile b/augur/7.0.2/Dockerfile → build-files/augur/7.0.2/Dockerfile
diff --git a/augur/8.0.0/Dockerfile → build-files/augur/8.0.0/Dockerfile b/augur/8.0.0/Dockerfile → build-files/augur/8.0.0/Dockerfile
diff --git a/augur/9.0.0/Dockerfile → build-files/augur/9.0.0/Dockerfile b/augur/9.0.0/Dockerfile → build-files/augur/9.0.0/Dockerfile
diff --git a/auspice/2.12.0/Dockerfile → build-files/auspice/2.12.0/Dockerfile b/auspice/2.12.0/Dockerfile → build-files/auspice/2.12.0/Dockerfile
diff --git a/bakta/1.9.2-5.1-light/Dockerfile → build-files/bakta/1.9.2-5.1-light/Dockerfile b/bakta/1.9.2-5.1-light/Dockerfile → build-files/bakta/1.9.2-5.1-light/Dockerfile
diff --git a/bakta/1.9.2-5.1-light/README.md → build-files/bakta/1.9.2-5.1-light/README.md b/bakta/1.9.2-5.1-light/README.md → build-files/bakta/1.9.2-5.1-light/README.md
diff --git a/bakta/1.9.2/Dockerfile → build-files/bakta/1.9.2/Dockerfile b/bakta/1.9.2/Dockerfile → build-files/bakta/1.9.2/Dockerfile
diff --git a/bakta/1.9.2/README.md → build-files/bakta/1.9.2/README.md b/bakta/1.9.2/README.md → build-files/bakta/1.9.2/README.md
diff --git a/bakta/1.9.3-5.1-light/Dockerfile → build-files/bakta/1.9.3-5.1-light/Dockerfile b/bakta/1.9.3-5.1-light/Dockerfile → build-files/bakta/1.9.3-5.1-light/Dockerfile
diff --git a/bakta/1.9.3-5.1-light/README.md → build-files/bakta/1.9.3-5.1-light/README.md b/bakta/1.9.3-5.1-light/README.md → build-files/bakta/1.9.3-5.1-light/README.md
diff --git a/bakta/1.9.3/Dockerfile → build-files/bakta/1.9.3/Dockerfile b/bakta/1.9.3/Dockerfile → build-files/bakta/1.9.3/Dockerfile
diff --git a/bakta/1.9.3/README.md → build-files/bakta/1.9.3/README.md b/bakta/1.9.3/README.md → build-files/bakta/1.9.3/README.md
diff --git a/bakta/1.9.4-5.1-light/Dockerfile → build-files/bakta/1.9.4-5.1-light/Dockerfile b/bakta/1.9.4-5.1-light/Dockerfile → build-files/bakta/1.9.4-5.1-light/Dockerfile
diff --git a/bakta/1.9.4-5.1-light/README.md → build-files/bakta/1.9.4-5.1-light/README.md b/bakta/1.9.4-5.1-light/README.md → build-files/bakta/1.9.4-5.1-light/README.md
diff --git a/bakta/1.9.4/Dockerfile → build-files/bakta/1.9.4/Dockerfile b/bakta/1.9.4/Dockerfile → build-files/bakta/1.9.4/Dockerfile
diff --git a/bakta/1.9.4/README.md → build-files/bakta/1.9.4/README.md b/bakta/1.9.4/README.md → build-files/bakta/1.9.4/README.md
diff --git a/bandage/0.8.1/Dockerfile → build-files/bandage/0.8.1/Dockerfile b/bandage/0.8.1/Dockerfile → build-files/bandage/0.8.1/Dockerfile
diff --git a/bandage/0.8.1/README.md → build-files/bandage/0.8.1/README.md b/bandage/0.8.1/README.md → build-files/bandage/0.8.1/README.md
diff --git a/bbtools/38.76/Dockerfile → build-files/bbtools/38.76/Dockerfile b/bbtools/38.76/Dockerfile → build-files/bbtools/38.76/Dockerfile
diff --git a/bbtools/38.86/Dockerfile → build-files/bbtools/38.86/Dockerfile b/bbtools/38.86/Dockerfile → build-files/bbtools/38.86/Dockerfile
diff --git a/bbtools/38.94/Dockerfile → build-files/bbtools/38.94/Dockerfile b/bbtools/38.94/Dockerfile → build-files/bbtools/38.94/Dockerfile
diff --git a/bbtools/38.95/Dockerfile → build-files/bbtools/38.95/Dockerfile b/bbtools/38.95/Dockerfile → build-files/bbtools/38.95/Dockerfile
diff --git a/bbtools/38.96/Dockerfile → build-files/bbtools/38.96/Dockerfile b/bbtools/38.96/Dockerfile → build-files/bbtools/38.96/Dockerfile
diff --git a/bbtools/38.96/README.md → build-files/bbtools/38.96/README.md b/bbtools/38.96/README.md → build-files/bbtools/38.96/README.md
diff --git a/bbtools/38.97/Dockerfile → build-files/bbtools/38.97/Dockerfile b/bbtools/38.97/Dockerfile → build-files/bbtools/38.97/Dockerfile
diff --git a/bbtools/38.97/README.md → build-files/bbtools/38.97/README.md b/bbtools/38.97/README.md → build-files/bbtools/38.97/README.md
diff --git a/bbtools/38.98/Dockerfile → build-files/bbtools/38.98/Dockerfile b/bbtools/38.98/Dockerfile → build-files/bbtools/38.98/Dockerfile
diff --git a/bbtools/38.98/README.md → build-files/bbtools/38.98/README.md b/bbtools/38.98/README.md → build-files/bbtools/38.98/README.md
diff --git a/bbtools/38.99/Dockerfile → build-files/bbtools/38.99/Dockerfile b/bbtools/38.99/Dockerfile → build-files/bbtools/38.99/Dockerfile
diff --git a/bbtools/38.99/README.md → build-files/bbtools/38.99/README.md b/bbtools/38.99/README.md → build-files/bbtools/38.99/README.md
diff --git a/bbtools/39.00/Dockerfile → build-files/bbtools/39.00/Dockerfile b/bbtools/39.00/Dockerfile → build-files/bbtools/39.00/Dockerfile
diff --git a/bbtools/39.00/README.md → build-files/bbtools/39.00/README.md b/bbtools/39.00/README.md → build-files/bbtools/39.00/README.md
diff --git a/bbtools/39.01/Dockerfile → build-files/bbtools/39.01/Dockerfile b/bbtools/39.01/Dockerfile → build-files/bbtools/39.01/Dockerfile
diff --git a/bbtools/39.01/README.md → build-files/bbtools/39.01/README.md b/bbtools/39.01/README.md → build-files/bbtools/39.01/README.md
diff --git a/bbtools/39.06/Dockerfile → build-files/bbtools/39.06/Dockerfile b/bbtools/39.06/Dockerfile → build-files/bbtools/39.06/Dockerfile
diff --git a/bbtools/39.06/README.md → build-files/bbtools/39.06/README.md b/bbtools/39.06/README.md → build-files/bbtools/39.06/README.md
diff --git a/bbtools/39.10/Dockerfile → build-files/bbtools/39.10/Dockerfile b/bbtools/39.10/Dockerfile → build-files/bbtools/39.10/Dockerfile
diff --git a/bbtools/39.10/README.md → build-files/bbtools/39.10/README.md b/bbtools/39.10/README.md → build-files/bbtools/39.10/README.md
diff --git a/bcftools/1.10.2/Dockerfile → build-files/bcftools/1.10.2/Dockerfile b/bcftools/1.10.2/Dockerfile → build-files/bcftools/1.10.2/Dockerfile
diff --git a/bcftools/1.11/Dockerfile → build-files/bcftools/1.11/Dockerfile b/bcftools/1.11/Dockerfile → build-files/bcftools/1.11/Dockerfile
diff --git a/bcftools/1.12/Dockerfile → build-files/bcftools/1.12/Dockerfile b/bcftools/1.12/Dockerfile → build-files/bcftools/1.12/Dockerfile
diff --git a/bcftools/1.12/Readme.md → build-files/bcftools/1.12/Readme.md b/bcftools/1.12/Readme.md → build-files/bcftools/1.12/Readme.md
diff --git a/bcftools/1.13/Dockerfile → build-files/bcftools/1.13/Dockerfile b/bcftools/1.13/Dockerfile → build-files/bcftools/1.13/Dockerfile
diff --git a/bcftools/1.13/Readme.md → build-files/bcftools/1.13/Readme.md b/bcftools/1.13/Readme.md → build-files/bcftools/1.13/Readme.md
diff --git a/bcftools/1.14/Dockerfile → build-files/bcftools/1.14/Dockerfile b/bcftools/1.14/Dockerfile → build-files/bcftools/1.14/Dockerfile
diff --git a/bcftools/1.14/Readme.md → build-files/bcftools/1.14/Readme.md b/bcftools/1.14/Readme.md → build-files/bcftools/1.14/Readme.md
diff --git a/bcftools/1.15/Dockerfile → build-files/bcftools/1.15/Dockerfile b/bcftools/1.15/Dockerfile → build-files/bcftools/1.15/Dockerfile
diff --git a/bcftools/1.15/Readme.md → build-files/bcftools/1.15/Readme.md b/bcftools/1.15/Readme.md → build-files/bcftools/1.15/Readme.md
diff --git a/bcftools/1.16/Dockerfile → build-files/bcftools/1.16/Dockerfile b/bcftools/1.16/Dockerfile → build-files/bcftools/1.16/Dockerfile
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diff --git a/bcftools/1.17/Dockerfile → build-files/bcftools/1.17/Dockerfile b/bcftools/1.17/Dockerfile → build-files/bcftools/1.17/Dockerfile
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diff --git a/dnaapler/0.4.0/README.md → build-files/dnaapler/0.4.0/README.md b/dnaapler/0.4.0/README.md → build-files/dnaapler/0.4.0/README.md
diff --git a/dnaapler/0.5.0/Dockerfile → build-files/dnaapler/0.5.0/Dockerfile b/dnaapler/0.5.0/Dockerfile → build-files/dnaapler/0.5.0/Dockerfile
diff --git a/dnaapler/0.5.0/README.md → build-files/dnaapler/0.5.0/README.md b/dnaapler/0.5.0/README.md → build-files/dnaapler/0.5.0/README.md
diff --git a/dnaapler/0.5.1/Dockerfile → build-files/dnaapler/0.5.1/Dockerfile b/dnaapler/0.5.1/Dockerfile → build-files/dnaapler/0.5.1/Dockerfile
diff --git a/dnaapler/0.5.1/README.md → build-files/dnaapler/0.5.1/README.md b/dnaapler/0.5.1/README.md → build-files/dnaapler/0.5.1/README.md
diff --git a/dnaapler/0.7.0/Dockerfile → build-files/dnaapler/0.7.0/Dockerfile b/dnaapler/0.7.0/Dockerfile → build-files/dnaapler/0.7.0/Dockerfile
diff --git a/dnaapler/0.7.0/README.md → build-files/dnaapler/0.7.0/README.md b/dnaapler/0.7.0/README.md → build-files/dnaapler/0.7.0/README.md
diff --git a/dnaapler/0.8.0/Dockerfile → build-files/dnaapler/0.8.0/Dockerfile b/dnaapler/0.8.0/Dockerfile → build-files/dnaapler/0.8.0/Dockerfile
diff --git a/dnaapler/0.8.0/README.md → build-files/dnaapler/0.8.0/README.md b/dnaapler/0.8.0/README.md → build-files/dnaapler/0.8.0/README.md
diff --git a/dnaapler/0.8.1/Dockerfile → build-files/dnaapler/0.8.1/Dockerfile b/dnaapler/0.8.1/Dockerfile → build-files/dnaapler/0.8.1/Dockerfile
diff --git a/dnaapler/0.8.1/README.md → build-files/dnaapler/0.8.1/README.md b/dnaapler/0.8.1/README.md → build-files/dnaapler/0.8.1/README.md
diff --git a/dnaapler/1.0.1/Dockerfile → build-files/dnaapler/1.0.1/Dockerfile b/dnaapler/1.0.1/Dockerfile → build-files/dnaapler/1.0.1/Dockerfile
diff --git a/dnaapler/1.0.1/README.md → build-files/dnaapler/1.0.1/README.md b/dnaapler/1.0.1/README.md → build-files/dnaapler/1.0.1/README.md
diff --git a/dorado/0.8.0/Dockerfile → build-files/dorado/0.8.0/Dockerfile b/dorado/0.8.0/Dockerfile → build-files/dorado/0.8.0/Dockerfile
diff --git a/dorado/0.8.0/README.md → build-files/dorado/0.8.0/README.md b/dorado/0.8.0/README.md → build-files/dorado/0.8.0/README.md
diff --git a/dorado/0.8.3/Dockerfile → build-files/dorado/0.8.3/Dockerfile b/dorado/0.8.3/Dockerfile → build-files/dorado/0.8.3/Dockerfile
diff --git a/dorado/0.8.3/README.md → build-files/dorado/0.8.3/README.md b/dorado/0.8.3/README.md → build-files/dorado/0.8.3/README.md
diff --git a/dragonflye/1.0.14/Dockerfile → build-files/dragonflye/1.0.14/Dockerfile b/dragonflye/1.0.14/Dockerfile → build-files/dragonflye/1.0.14/Dockerfile
diff --git a/dragonflye/1.0.14/README.md → build-files/dragonflye/1.0.14/README.md b/dragonflye/1.0.14/README.md → build-files/dragonflye/1.0.14/README.md
diff --git a/dragonflye/1.1.1/Dockerfile → build-files/dragonflye/1.1.1/Dockerfile b/dragonflye/1.1.1/Dockerfile → build-files/dragonflye/1.1.1/Dockerfile
diff --git a/dragonflye/1.1.1/README.md → build-files/dragonflye/1.1.1/README.md b/dragonflye/1.1.1/README.md → build-files/dragonflye/1.1.1/README.md
diff --git a/dragonflye/1.1.2/Dockerfile → build-files/dragonflye/1.1.2/Dockerfile b/dragonflye/1.1.2/Dockerfile → build-files/dragonflye/1.1.2/Dockerfile
diff --git a/dragonflye/1.1.2/README.md → build-files/dragonflye/1.1.2/README.md b/dragonflye/1.1.2/README.md → build-files/dragonflye/1.1.2/README.md
diff --git a/dragonflye/1.2.0/Dockerfile → build-files/dragonflye/1.2.0/Dockerfile b/dragonflye/1.2.0/Dockerfile → build-files/dragonflye/1.2.0/Dockerfile
diff --git a/dragonflye/1.2.0/README.md → build-files/dragonflye/1.2.0/README.md b/dragonflye/1.2.0/README.md → build-files/dragonflye/1.2.0/README.md
diff --git a/dragonflye/1.2.1/Dockerfile → build-files/dragonflye/1.2.1/Dockerfile b/dragonflye/1.2.1/Dockerfile → build-files/dragonflye/1.2.1/Dockerfile
diff --git a/dragonflye/1.2.1/README.md → build-files/dragonflye/1.2.1/README.md b/dragonflye/1.2.1/README.md → build-files/dragonflye/1.2.1/README.md
diff --git a/drprg/0.1.1/Dockerfile → build-files/drprg/0.1.1/Dockerfile b/drprg/0.1.1/Dockerfile → build-files/drprg/0.1.1/Dockerfile
diff --git a/drprg/0.1.1/README.md → build-files/drprg/0.1.1/README.md b/drprg/0.1.1/README.md → build-files/drprg/0.1.1/README.md
diff --git a/dsk/0.0.100/Dockerfile → build-files/dsk/0.0.100/Dockerfile b/dsk/0.0.100/Dockerfile → build-files/dsk/0.0.100/Dockerfile
diff --git a/dsk/0.0.100/README.md → build-files/dsk/0.0.100/README.md b/dsk/0.0.100/README.md → build-files/dsk/0.0.100/README.md
diff --git a/dsk/2.3.3/Dockerfile → build-files/dsk/2.3.3/Dockerfile b/dsk/2.3.3/Dockerfile → build-files/dsk/2.3.3/Dockerfile
diff --git a/dsk/2.3.3/README.md → build-files/dsk/2.3.3/README.md b/dsk/2.3.3/README.md → build-files/dsk/2.3.3/README.md
diff --git a/elgato/1.15.2/Dockerfile → build-files/elgato/1.15.2/Dockerfile b/elgato/1.15.2/Dockerfile → build-files/elgato/1.15.2/Dockerfile
diff --git a/elgato/1.15.2/README.md → build-files/elgato/1.15.2/README.md b/elgato/1.15.2/README.md → build-files/elgato/1.15.2/README.md
diff --git a/elgato/1.18.2/Dockerfile → build-files/elgato/1.18.2/Dockerfile b/elgato/1.18.2/Dockerfile → build-files/elgato/1.18.2/Dockerfile
diff --git a/elgato/1.18.2/README.md → build-files/elgato/1.18.2/README.md b/elgato/1.18.2/README.md → build-files/elgato/1.18.2/README.md
diff --git a/elgato/1.19.0/Dockerfile → build-files/elgato/1.19.0/Dockerfile b/elgato/1.19.0/Dockerfile → build-files/elgato/1.19.0/Dockerfile
diff --git a/elgato/1.19.0/README.md → build-files/elgato/1.19.0/README.md b/elgato/1.19.0/README.md → build-files/elgato/1.19.0/README.md
diff --git a/elgato/1.20.0/Dockerfile → build-files/elgato/1.20.0/Dockerfile b/elgato/1.20.0/Dockerfile → build-files/elgato/1.20.0/Dockerfile
diff --git a/elgato/1.20.0/README.md → build-files/elgato/1.20.0/README.md b/elgato/1.20.0/README.md → build-files/elgato/1.20.0/README.md
diff --git a/elgato/1.20.1/Dockerfile → build-files/elgato/1.20.1/Dockerfile b/elgato/1.20.1/Dockerfile → build-files/elgato/1.20.1/Dockerfile
diff --git a/elgato/1.20.1/README.md → build-files/elgato/1.20.1/README.md b/elgato/1.20.1/README.md → build-files/elgato/1.20.1/README.md
diff --git a/emboss/6.6.0/Dockerfile → build-files/emboss/6.6.0/Dockerfile b/emboss/6.6.0/Dockerfile → build-files/emboss/6.6.0/Dockerfile
diff --git a/emboss/6.6.0/README.md → build-files/emboss/6.6.0/README.md b/emboss/6.6.0/README.md → build-files/emboss/6.6.0/README.md
diff --git a/emmtyper/0.2.0/Dockerfile → build-files/emmtyper/0.2.0/Dockerfile b/emmtyper/0.2.0/Dockerfile → build-files/emmtyper/0.2.0/Dockerfile
diff --git a/emmtyper/0.2.0/README.md → build-files/emmtyper/0.2.0/README.md b/emmtyper/0.2.0/README.md → build-files/emmtyper/0.2.0/README.md
diff --git a/emmtypingtool/0.0.1/Dockerfile → build-files/emmtypingtool/0.0.1/Dockerfile b/emmtypingtool/0.0.1/Dockerfile → build-files/emmtypingtool/0.0.1/Dockerfile
diff --git a/emmtypingtool/0.0.1/README.md → build-files/emmtypingtool/0.0.1/README.md b/emmtypingtool/0.0.1/README.md → build-files/emmtypingtool/0.0.1/README.md
diff --git a/etoki/1.2.1/Dockerfile → build-files/etoki/1.2.1/Dockerfile b/etoki/1.2.1/Dockerfile → build-files/etoki/1.2.1/Dockerfile
diff --git a/etoki/1.2.1/README.md → build-files/etoki/1.2.1/README.md b/etoki/1.2.1/README.md → build-files/etoki/1.2.1/README.md
diff --git a/fastani/1.1/Dockerfile → build-files/fastani/1.1/Dockerfile b/fastani/1.1/Dockerfile → build-files/fastani/1.1/Dockerfile
diff --git a/fastani/1.32/Dockerfile → build-files/fastani/1.32/Dockerfile b/fastani/1.32/Dockerfile → build-files/fastani/1.32/Dockerfile
diff --git a/fastani/1.33-RGDv2/Dockerfile → build-files/fastani/1.33-RGDv2/Dockerfile b/fastani/1.33-RGDv2/Dockerfile → build-files/fastani/1.33-RGDv2/Dockerfile
diff --git a/fastani/1.33-RGDv2/README.md → build-files/fastani/1.33-RGDv2/README.md b/fastani/1.33-RGDv2/README.md → build-files/fastani/1.33-RGDv2/README.md
diff --git a/...-NCBI-assembly-accessions-and-species.txt → ...-NCBI-assembly-accessions-and-species.txt b/...-NCBI-assembly-accessions-and-species.txt → ...-NCBI-assembly-accessions-and-species.txt
diff --git a/...-RGDv2/RGDv2-NCBI-assembly-accessions.txt → ...-RGDv2/RGDv2-NCBI-assembly-accessions.txt b/...-RGDv2/RGDv2-NCBI-assembly-accessions.txt → ...-RGDv2/RGDv2-NCBI-assembly-accessions.txt
diff --git a/fastani/1.33-RGDv2/RGDv2-metadata.tsv → ...les/fastani/1.33-RGDv2/RGDv2-metadata.tsv b/fastani/1.33-RGDv2/RGDv2-metadata.tsv → ...les/fastani/1.33-RGDv2/RGDv2-metadata.tsv
diff --git a/fastani/1.33/Dockerfile → build-files/fastani/1.33/Dockerfile b/fastani/1.33/Dockerfile → build-files/fastani/1.33/Dockerfile
diff --git a/fastani/1.34-RGDV2/Dockerfile → build-files/fastani/1.34-RGDV2/Dockerfile b/fastani/1.34-RGDV2/Dockerfile → build-files/fastani/1.34-RGDV2/Dockerfile
diff --git a/fastani/1.34-RGDV2/README.md → build-files/fastani/1.34-RGDV2/README.md b/fastani/1.34-RGDV2/README.md → build-files/fastani/1.34-RGDV2/README.md
diff --git a/...-NCBI-assembly-accessions-and-species.txt → ...-NCBI-assembly-accessions-and-species.txt b/...-NCBI-assembly-accessions-and-species.txt → ...-NCBI-assembly-accessions-and-species.txt
diff --git a/...-RGDV2/RGDv2-NCBI-assembly-accessions.txt → ...-RGDV2/RGDv2-NCBI-assembly-accessions.txt b/...-RGDV2/RGDv2-NCBI-assembly-accessions.txt → ...-RGDV2/RGDv2-NCBI-assembly-accessions.txt
diff --git a/fastani/1.34-RGDV2/RGDv2-metadata.tsv → ...les/fastani/1.34-RGDV2/RGDv2-metadata.tsv b/fastani/1.34-RGDV2/RGDv2-metadata.tsv → ...les/fastani/1.34-RGDV2/RGDv2-metadata.tsv
diff --git a/fastani/1.34/Dockerfile → build-files/fastani/1.34/Dockerfile b/fastani/1.34/Dockerfile → build-files/fastani/1.34/Dockerfile
diff --git a/fastani/1.34/README.md → build-files/fastani/1.34/README.md b/fastani/1.34/README.md → build-files/fastani/1.34/README.md
diff --git a/fasten/0.7.2/Dockerfile → build-files/fasten/0.7.2/Dockerfile b/fasten/0.7.2/Dockerfile → build-files/fasten/0.7.2/Dockerfile
diff --git a/fasten/0.7.2/README.md → build-files/fasten/0.7.2/README.md b/fasten/0.7.2/README.md → build-files/fasten/0.7.2/README.md
diff --git a/fasten/0.8.1/Dockerfile → build-files/fasten/0.8.1/Dockerfile b/fasten/0.8.1/Dockerfile → build-files/fasten/0.8.1/Dockerfile
diff --git a/fasten/0.8.1/README.md → build-files/fasten/0.8.1/README.md b/fasten/0.8.1/README.md → build-files/fasten/0.8.1/README.md
diff --git a/fastp/0.23.2/Dockerfile → build-files/fastp/0.23.2/Dockerfile b/fastp/0.23.2/Dockerfile → build-files/fastp/0.23.2/Dockerfile
diff --git a/fastp/0.23.2/README.md → build-files/fastp/0.23.2/README.md b/fastp/0.23.2/README.md → build-files/fastp/0.23.2/README.md
diff --git a/fastp/0.23.4/Dockerfile → build-files/fastp/0.23.4/Dockerfile b/fastp/0.23.4/Dockerfile → build-files/fastp/0.23.4/Dockerfile
diff --git a/fastp/0.23.4/README.md → build-files/fastp/0.23.4/README.md b/fastp/0.23.4/README.md → build-files/fastp/0.23.4/README.md
diff --git a/fastq-scan/0.4.3/Dockerfile → build-files/fastq-scan/0.4.3/Dockerfile b/fastq-scan/0.4.3/Dockerfile → build-files/fastq-scan/0.4.3/Dockerfile
diff --git a/fastq-scan/0.4.4/Dockerfile → build-files/fastq-scan/0.4.4/Dockerfile b/fastq-scan/0.4.4/Dockerfile → build-files/fastq-scan/0.4.4/Dockerfile
diff --git a/fastq-scan/0.4.4/README.md → build-files/fastq-scan/0.4.4/README.md b/fastq-scan/0.4.4/README.md → build-files/fastq-scan/0.4.4/README.md
diff --git a/fastq-scan/1.0.0/Dockerfile → build-files/fastq-scan/1.0.0/Dockerfile b/fastq-scan/1.0.0/Dockerfile → build-files/fastq-scan/1.0.0/Dockerfile
diff --git a/fastq-scan/1.0.0/README.md → build-files/fastq-scan/1.0.0/README.md b/fastq-scan/1.0.0/README.md → build-files/fastq-scan/1.0.0/README.md
diff --git a/fastq-scan/1.0.1/Dockerfile → build-files/fastq-scan/1.0.1/Dockerfile b/fastq-scan/1.0.1/Dockerfile → build-files/fastq-scan/1.0.1/Dockerfile
diff --git a/fastq-scan/1.0.1/README.md → build-files/fastq-scan/1.0.1/README.md b/fastq-scan/1.0.1/README.md → build-files/fastq-scan/1.0.1/README.md
diff --git a/fastqc/0.11.8/Dockerfile → build-files/fastqc/0.11.8/Dockerfile b/fastqc/0.11.8/Dockerfile → build-files/fastqc/0.11.8/Dockerfile
-Original file line number
+Diff line change
@@ Expand Up / @@ -15,6 +15,7 @@ run-name: Updating Freyja @@
     jobs:
       update:
+        if: github.repository == 'StaPH-B/docker-builds'
         runs-on: ubuntu-latest
         steps:
           - name: pull repo
@@ Expand Down @@