Deploy checkm version 1.2.2 #231
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| ##### ------------------------------------------------------------------------------------------------ ##### | |
| ##### This caller workflow tests, builds, and pushes the image to Docker Hub and optionally Quay ##### | |
| ##### It also tests that a Singularity container can be run from the Docker image ##### | |
| ##### It takes manual input as to which tool, version, docker image tag, and repository name to deploy ##### | |
| ##### ------------------------------------------------------------------------------------------------ ##### | |
| name: Manual deploy | |
| on: | |
| workflow_dispatch: | |
| inputs: | |
| tool: | |
| description: "Tool to deploy. Must match filepath: /<tool>/version/Dockerfile" | |
| required: true | |
| version: | |
| description: "Version to deploy. Must match filepath: /tool/<version>/Dockerfile" | |
| required: true | |
| docker_image_tag: | |
| description: "Docker image tag to use: repository/tool:<tag> (Match version unless you require a custom tag)" | |
| required: true | |
| push_quay: | |
| description: "Deploy to Quay too? (repository must first exist on quay)" | |
| type: boolean | |
| default: true | |
| push_latest_tag: | |
| description: "Push and overwrite latest docker image tag? repository/tool:latest" | |
| default: true | |
| type: boolean | |
| repository_name: | |
| description: "Repository name. <repository>/tool:tag (Usually staphb)" | |
| default: "staphb" | |
| run-name: Deploy ${{ github.event.inputs.tool }} version ${{ github.event.inputs.version }} | |
| jobs: | |
| # This job calls a workflow to build the image to the 'test' stage | |
| build-to-test: | |
| uses: ./.github/workflows/build-to-test.yml | |
| with: | |
| path_to_context: "./${{ github.event.inputs.tool }}/${{ github.event.inputs.version }}" | |
| cache: ${{ github.event.inputs.tool }} | |
| # This job calls a workflow to build the image to the 'app' stage and pushes the image to Docker Hub | |
| build-to-deploy: | |
| needs: build-to-test | |
| uses: ./.github/workflows/build-to-deploy.yml | |
| secrets: # these are the secret login credientials for pushing the containers to the repository | |
| docker_username: ${{ secrets.DOCKER_HUB_USERNAME }} | |
| docker_access_token: ${{ secrets.DOCKER_HUB_ACCESS_TOKEN }} | |
| quay_username: ${{ secrets.quay_username }} | |
| quay_robot_token: ${{ secrets.quay_robot_token }} | |
| with: | |
| path_to_context: "./${{ github.event.inputs.tool }}/${{ github.event.inputs.version }}" | |
| repository_name: ${{ github.event.inputs.repository_name }} | |
| cache: ${{ github.event.inputs.tool }} | |
| container_name: ${{ github.event.inputs.tool }} | |
| tag: ${{ github.event.inputs.docker_image_tag }} | |
| push_quay: ${{ github.event.inputs.push_quay == 'true' }} | |
| push_latest_tag: ${{ github.event.inputs.push_latest_tag == 'true' }} | |
| # This job calls a workflow to pull the image from Docker Hub and test that it can be run as a Singularity container | |
| run-singularity: | |
| needs: build-to-deploy | |
| uses: ./.github/workflows/run-singularity.yml | |
| with: | |
| image_name: ${{ github.event.inputs.tool }}:${{ github.event.inputs.docker_image_tag }} | |
| repository_name: ${{ github.event.inputs.repository_name }} |