Code

[feat] Feat/hash algs#1

Code

Merged

St4NNi merged 25 commits intomainSt4NNi/jam-rs:mainfrom feat/hash-algsSt4NNi/jam-rs:feat/hash-algsCopy head branch name to clipboardSep 19, 2023

+1,017-272

Commits

Commits on Aug 12, 2023

• feat: Update sketching CLI options

  St4NNi

  committed
  f564d2d

• feat: Update sketching CLI options

  St4NNi

  committed
  6c153f1

• feat: Added github actions for codecov and tests

  St4NNi

  committed
  3f7a1f2

Commits on Aug 15, 2023

• feat: First draft for different hashing algorithms and updated sketching

  St4NNi

  committed
  9767c63

• fix: HashMap handling

  St4NNi

  committed
  8a4081f

• feat: Rename nmin, nmax

  St4NNi

  committed
  b707b53

Commits on Aug 19, 2023

• feat: Added min_max options for minimal and maximal kmers per record

  St4NNi

  committed
  6fd460d

• feat: Implemented new multi-algorithm sketching method

  St4NNi

  committed
  184f193

• feat: Added sourmash conversions

  St4NNi

  committed
  08e2962

• feat: Added sourmash serialisation mode

  St4NNi

  committed
  59999f2

• feat: Added full sketching method

  St4NNi

  committed
  77241b0

• feat: Update CLI arguments and README.md

  St4NNi

  committed
  9fb84c7

• fix: Update comments

  St4NNi

  committed
  2f7c488

• fix: Smaller default hashmap size

  St4NNi

  committed
  db5ade8

• feat: u64 (small) versions for murmur and xxhash

  St4NNi

  committed
  9556423

• feat: Update sketching function (wip)

  St4NNi

  committed
  ec899b5

• fix: Sourmash sig handling

  St4NNi

  committed
  08899ec

• fix: Speed up into_sourmash conversion

  St4NNi

  committed
  ec407a7

• fix: Sketch calculation, strip newlines properly

  St4NNi

  committed
  06f16ab

• fix: Fixed comparison logic

  St4NNi

  committed
  19e9826

• fix: Made .sig file Vec<Signatures>

  St4NNi

  committed
  c55e5fa

• chore: Update deps, made current test nightly only

  St4NNi

  committed
  4ad5e10

Commits on Sep 19, 2023

• chore: Upgrade deps

  St4NNi

  committed
  04b0927

• tests: Added sketch_helper basic tests

  St4NNi

  committed
  6ef565c

• chore: Refactor test setup

  St4NNi

  committed
  f474b3b