Updated to use the latest knncolle.

SingleR-inc · Dec 13, 2024 · 60b7fd1 · 60b7fd1
1 parent d55db15
commit 60b7fd1
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Showing 2 changed files with 3 additions and 2 deletions.
diff --git a/lib/src/train_single.cpp b/lib/src/train_single.cpp
@@ -17,10 +17,11 @@ TrainedSingleIntersectPointer train_single(
     const pybind11::array& ref_features,
     const pybind11::array& labels,
     const pybind11::list& markers,
-    const BuilderPointer& builder,
+    uintptr_t builder_ptr,
     int nthreads)
 {
     const auto& ref = mattress::cast(ref_ptr)->ptr;
+    const auto& builder = knncolle_py::cast_builder(builder_ptr)->ptr;
 
     singlepp::TrainSingleOptions<mattress::MatrixIndex, mattress::MatrixValue> opts;
     opts.num_threads = nthreads;

diff --git a/setup.cfg b/setup.cfg
@@ -50,7 +50,7 @@ python_requires = >=3.9
 install_requires =
     importlib-metadata; python_version<"3.8"
     mattress>=0.3.1
-    knncolle
+    knncolle>=0.1.1
     delayedarray
     biocframe>=0.5.0
     summarizedexperiment>=0.4.0