Update README with anndata/h5ad snippet #8
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name: Build documentation | |
on: | |
push: | |
branches: | |
- master | |
jobs: | |
test: | |
name: Build docs | |
runs-on: ubuntu-latest | |
steps: | |
- uses: actions/checkout@v3 | |
with: | |
submodules: true | |
- name: Set up Python 3.9 | |
uses: actions/setup-python@v2 | |
with: | |
python-version: 3.9 | |
cache: 'pip' | |
- name: Set up ccache | |
uses: hendrikmuhs/[email protected] | |
- name: Install Python dependencies | |
run: | | |
python -m pip install --upgrade pip setuptools | |
DEPENDENCIES=$(python -c 'from setuptools.config.setupcfg import read_configuration as c; a = c("setup.cfg"); print(" ".join(a["options"]["install_requires"][1:]))') | |
pip install ${DEPENDENCIES} | |
DOCDEPENDENCIES=$(python -c 'with open("docs/requirements.txt") as a: available = list(a); print(" ".join(map(lambda x : x.strip(), filter(lambda x : not x.startswith("#"), available))))') | |
pip install ${DOCDEPENDENCIES} | |
# Note that doc building requires the inplace shared library. | |
- name: Build docs | |
run: | | |
CC="ccache gcc" python setup.py build_ext --inplace | |
sphinx-build --color -b html -d docs/doctrees docs docs/_build/html | |
touch ./docs/_build/html/.nojekyll | |
- name: GH Pages Deployment | |
if: github.ref == 'refs/heads/master' || startsWith(github.ref, 'refs/tags/') | |
uses: JamesIves/[email protected] | |
with: | |
branch: gh-pages # The branch the action should deploy to. | |
folder: ./docs/_build/html | |
clean: true # Automatically remove deleted files from the deploy branch |