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Updated the NEWS file.
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LTLA committed Dec 15, 2024
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Expand Up @@ -11,6 +11,18 @@ This should be faster than the previous \pkg{BiocSingular} and \code{stats::kmea

\item Added a \code{configureMarkerHeatmap()} function to perform all the calculations used by \code{plotMarkerHeatmap()}.
This allows users to re-use the calculations with a custom visualization for the expression values.

\item Automatically remove duplicated gene names in \code{trainSingleR()}.
This avoids matching to the wrong gene after identifying markers from the reference dataset.

\item Report scores as a DataFrame of nested Dataframes in \code{combineRecomputedResults()}.
Each inner DataFrame corresponds to a reference and contains the identity of the best label and the recomputed score in that reference.
This is simpler and more efficient than the previous "expanded with NA" format.

\item Report the deltas (i.e., difference between the best and next-best scores) in \code{combineRecomputedResults()}.

\item Separate the missingness check arguments in \code{SingleR()} with the new \code{check.missing.test=} and \code{check.missing.ref=} options.
The former is disabled by default, to avoid an unnecessary missingness check in the vast majority of test cases.
}}

\section{Version 2.8.0}{\itemize{
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