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Added NEWS entry, updated DESCRIPTION.
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LTLA committed Sep 6, 2024
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4 changes: 2 additions & 2 deletions DESCRIPTION
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Package: SingleR
Title: Reference-Based Single-Cell RNA-Seq Annotation
Version: 2.7.1
Date: 2024-05-22
Version: 2.7.2
Date: 2024-09-06
Authors@R: c(person("Dvir", "Aran", email="[email protected]", role=c("aut", "cph")),
person("Aaron", "Lun", email="[email protected]", role=c("ctb", "cre")),
person("Daniel", "Bunis", role="ctb"),
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8 changes: 8 additions & 0 deletions inst/NEWS.Rd
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\title{SingleR News}
\encoding{UTF-8}

\section{Version 2.8.0}{\itemize{
\item Added the \code{test.genes=} argument to \code{trainSingleR()}, to restrict marker detection to only those genes in the test dataset.
This is also checked against \code{rownames(test)} in \code{classifySingleR()} to ensure that the test's feature space is consistent with the space used during training.
\item Restored the \code{BNPARAM=} argument in \code{trainSingleR()}, to enable more fine-grained specification of neighbor search algorithms.
The \code{approximate=} argument is deprecated.
}}
\section{Version 2.0.0}{\itemize{
\item The format of the output of \code{trainSingleR()} has changed and is no longer back-compatible.
\item \code{recompute=FALSE} in \code{trainSingleR()} does nothing; all integrated analyses are now done with \code{recompute=TRUE}.
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