Add GW-run.sh

RUN/GW-run.sh

@@ -0,0 +1,68 @@
+#!/bin/sh
+set -u
+####################################
+# set up GW runs with YAML file
+# CI yamls can be found at ${HOMEgfs}/ci/cases/{pr/weekly}/
+####################################
+# Code
+#ss REPO=NeilBarton-NOAA && HASH=gefs_replay_ci 
+#ss #REPO=NeilBarton-NOAA && HASH=SFS 
+#ss #REPO=NeilBarton-NOAA && HASH=C192 
+export IDATE=2018050100
+HOMEgfs=${1:-${PWD}/../}
+#YAML=${2:-${HOME}/GW/YAMLS/SFS.yaml}
+#ssYAML=${2:-${HOMEgfs}/ci/cases/pr/C96_S2SWA_gefs_replay_ics.yaml}
+YAML=${2:-${HOMEgfs}/ci/cases/sfs/C96mx100_S2S.yaml}
+
+########################
+# Check Code
+[[ ! -d ${HOMEgfs} ]] && echo "code is not at ${HOMEgfs}" &&  exit 1
+[[ ! -f ${YAML} ]] && echo "yaml file not at ${YAML}" &&  exit 1
+echo "HOMEgfs: ${HOMEgfs}"
+echo "YAML: ${YAML}"
+
+########################
+NPB_WORKDIR# Machine Specific and Personallized options
+machine=$(uname -n)
+ACCOUNT=gsd-fv3-dev
+#ssexport TOPICDIR=${NPB_WORKDIR}/ICs
+export TOPICDIR=/scratch2/NCEPDEV/stmp1/Neil.Barton/ICs
+export RUNTESTS=${HOMEgfs}
+[[ ${machine:0:3} == hfe ]] && m=hera && RUNDIRS=/scratch1/NCEPDEV/stmp2/Neil.Barton/RUNDIRS && ACCOUNT=marine-cpu
+[[ ${machine} == *[cd]login* ]] && m=wcoss2 && ACCOUNT=GFS-DEV 
+[[ ${machine} == *Orion* ]] && m=orion && RUNDIRS=/work/noaa/stmp/nbarton/ORION/RUNDIRS
+[[ ${machine} == hercules* ]] && m=hercules && RUNDIRS=/work/noaa/stmp/nbarton/HERCULES/RUNDIRS
+
+############
+# set up run
+#ss export pslot=${HASH}_$(basename ${YAML/.yaml*})
+export pslot=orig
+CD=$(dirname "$0")
+source ${HOMEgfs}/ci/platforms/config.${m/.*}
+source ${HOMEgfs}/workflow/gw_setup.sh
+export HPC_ACCOUNT=${ACCOUNT}
+export YAML_DIR=${HOMEgfs}
+${HOMEgfs}/workflow/create_experiment.py --yaml "${YAML}" 
+
+################################################
+# Soft link items into expdir for easier development
+TOPEXPDIR=${RUNTESTS}/EXPDIR/${pslot}
+set +u
+source ${TOPEXPDIR}/config.base
+set -u
+cd ${TOPEXPDIR}
+ln -sf ${RUNDIRS}/${PSLOT} RUNDIRS
+ln -sf ${HOMEgfs} GW-CODE
+ln -sf ${HOMEgfs}/parm/config ORIG_CONFIGS
+ln -sf ${COMROOT}/${PSLOT}/logs LOGS_COMROOT
+ln -sf ${HOMEgfs}/workflow/setup_xml.py . 
+ln -sf ${HOMEgfs}/workflow/rocoto_viewer.py .
+
+################################################
+# start rocotorun and add crontab
+xml_file=${PWD}/${pslot}.xml && db_file=${PWD}/${pslot}.db && cron_file=${PWD}/${pslot}.crontab
+## rocotorun -d ${db_file} -w ${xml_file}
+## crontab -l | cat - ${cron_file} | crontab -
+# echo crontab file
+## echo "db=${db_file}"
+## echo "xml=${xml_file}"