Fix indentation issue #4
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| name: UBSAN/ASAN Checks | ||
| on: | ||
| pull_request: | ||
| branches: [ "main" ] | ||
| push: | ||
| branches: ["nlopt-update"] | ||
| workflow_dispatch: | ||
| permissions: | ||
| contents: read | ||
| jobs: | ||
| SAN-check: | ||
| runs-on: ubuntu-latest | ||
| name: clang-win-builder-SAN (llvm-${{ matrix.compiler }} R-${{matrix.R}}) | ||
| strategy: | ||
| fail-fast: false | ||
| matrix: | ||
|
Check failure on line 20 in .github/workflows/win-builder-check.yaml
|
||
| compiler: | ||
| # - llvm-16.0.6 | ||
| # - llvm-17.0.6 | ||
| - llvm-18.1.8 | ||
| # - llvm-19.1.0 | ||
| # - llvm-20.0.0 | ||
| R: ['release', 'devel'] | ||
| env: | ||
| CC: clang | ||
| CXX: clang++ | ||
| CXXFLAGS: "-fsanitize=address,undefined -fno-sanitize=float-divide-by-zero -fno-sanitize=alignment -fno-omit-frame-pointer -frtti -std=gnu++17" | ||
| LINK: clang++ | ||
| ASAN: true | ||
| UBSAN: true | ||
| GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | ||
| RSPM: https://packagemanager.rstudio.com/cran/__linux__/jammy/latest | ||
| R_REMOTES_NO_ERRORS_FROM_WARNINGS: true | ||
| ## R CMD check | ||
| _R_CHECK_CRAN_INCOMING_: false | ||
| _R_CHECK_LENGTH_1_CONDITION_: true | ||
| _R_CHECK_LENGTH_1_LOGIC2_: true | ||
| _R_CHECK_MATRIX_DATA_: true | ||
| ## Specific to package | ||
| _R_CHECK_USE_VALGRIND_: true | ||
| UBSAN_OPTIONS: "print_stacktrace=1" | ||
| steps: | ||
| - uses: actions/checkout@v2 | ||
| - name: Cache | ||
| uses: actions/cache@v3 | ||
| with: | ||
| path: | | ||
| ./build/ | ||
| ~/vcpkg | ||
| ~/.cache/vcpkg/archives | ||
| ${{ env.LOCALAPPDATA }}/vcpkg/archives | ||
| ${{ env.APPDATA }}/vcpkg/archives | ||
| ${{ env.XDG_CACHE_HOME }}/vcpkg/archives | ||
| ~/.cache/ccache | ||
| ~/.ccache | ||
| ~/.config/ccache | ||
| ~/Library/Caches/ccache | ||
| ${{ env.LOCALAPPDATA }}/ccache | ||
| ${{ env.XDG_CACHE_HOME }}/ccache | ||
| key: ${{ runner.os }}-${{ matrix.compiler }}-${{ env.BUILD_TYPE }}-${{ hashFiles('**/CMakeLists.txt', './vcpkg.json') }} | ||
| restore-keys: | | ||
| ${{ runner.os }}-${{ env.BUILD_TYPE }}- | ||
| - uses: awalsh128/cache-apt-pkgs-action@latest | ||
| with: | ||
| packages: | | ||
| cmake cmake-data gsl dh-elpa-helper libcmark-gfm-extensions0.29.0.gfm.3 | ||
| libcmark-gfm0.29.0.gfm.3 libcurl4-openssl-dev libjsoncpp25 librhash0 | ||
| pandoc pandoc-data | ||
| - name: Setup Cpp (C++ / C) | ||
| uses: aminya/setup-cpp@v1 | ||
| with: | ||
| compiler: ${{ matrix.compiler }} | ||
| cmake: true | ||
| cache-tools: true | ||
| llvm: true | ||
| make: true | ||
| - uses: r-lib/actions/setup-tinytex@v2 | ||
| - name: Install additional LaTeX packages | ||
| run: | | ||
| tlmgr update --self | ||
| tlmgr install makeindex | ||
| tlmgr list --only-installed | ||
| - uses: r-lib/actions/setup-pandoc@v2 | ||
| - uses: r-lib/actions/setup-r@v2 | ||
| with: | ||
| r-version: ${{matrix.R}} | ||
| install-r: true | ||
| - name: Query dependencies | ||
| run: | | ||
| install.packages('remotes') | ||
| saveRDS(remotes::dev_package_deps(dependencies = TRUE), ".github/depends.Rds", version = 2) | ||
| writeLines(sprintf("R-%i.%i", getRversion()$major, getRversion()$minor), ".github/R-version") | ||
| shell: Rscript {0} | ||
| - uses: r-lib/actions/setup-r-dependencies@v2 | ||
| with: | ||
| extra-packages: any::rcmdcheck, any::roxygen2 | ||
| needs: check | ||
| - name: Session info | ||
| run: | | ||
| options(width = 100) | ||
| pkgs <- installed.packages()[, "Package"] | ||
| sessioninfo::session_info(pkgs, include_base = TRUE) | ||
| shell: Rscript {0} | ||
| - name: Build and Check ToxicR | ||
| run: | | ||
| r_output=$(R CMD build .) | ||
| package_name=$(echo "$r_output" | sed -n "s/.*building ‘\([^’]*\.tar\.gz\)’.*/\1/p") | ||
| R CMD check --as-cran $package_name | ||
| shell: bash | ||
| working-directory: "." | ||
| - name: Upload check results | ||
| uses: actions/upload-artifact@v3 | ||
| with: | ||
| name: ${{ runner.os }}-rrelease-results | ||
| path: | | ||
| check | ||
| !check/ToxicR.Rcheck/00_pkg_src | ||
