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[WIP] Brusselator Benchmarks #796

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[WIP] Brusselator Benchmarks #796

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104d6d6
Brusselator Benchmarks
avik-pal Dec 12, 2023
2afef53
Reduce tolerance for now
avik-pal Dec 13, 2023
9707155
Update bruss.jmd
avik-pal Dec 13, 2023
2b5d05b
Use Makie Cycles for the Plots
avik-pal Dec 13, 2023
61e58bf
Implement a 10 min timeout
avik-pal Dec 14, 2023
9a18b89
Dont compare against MINPACK for the most part
avik-pal Dec 14, 2023
fe0ee12
Increase Problem Size
avik-pal Dec 14, 2023
aade17b
Up Manifest
avik-pal Dec 25, 2023
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136 changes: 118 additions & 18 deletions benchmarks/NonlinearProblem/Manifest.toml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -2,7 +2,7 @@

julia_version = "1.9.4"
manifest_format = "2.0"
project_hash = "4090429d0b3736bf8bd43e204e3f7cd4560f2869"
project_hash = "0cafc730975908a1c36809d2c97401c735af39bf"

[[deps.ADTypes]]
git-tree-sha1 = "332e5d7baeff8497b923b730b994fa480601efc7"
Expand All @@ -14,6 +14,12 @@ git-tree-sha1 = "574baf8110975760d391c710b6341da1afa48d8c"
uuid = "a4c015fc-c6ff-483c-b24f-f7ea428134e9"
version = "0.0.1"

[[deps.AbstractAlgebra]]
deps = ["GroupsCore", "InteractiveUtils", "LinearAlgebra", "MacroTools", "Preferences", "Random", "RandomExtensions", "SparseArrays", "Test"]
git-tree-sha1 = "d7832de8cf7af26abac741f10372080ac6cb73df"
uuid = "c3fe647b-3220-5bb0-a1ea-a7954cac585d"
version = "0.34.7"

[[deps.AbstractFFTs]]
deps = ["LinearAlgebra"]
git-tree-sha1 = "d92ad398961a3ed262d8bf04a1a2b8340f915fef"
Expand Down Expand Up @@ -129,6 +135,11 @@ git-tree-sha1 = "f1f03a9fa24271160ed7e73051fba3c1a759b53f"
uuid = "6e4b80f9-dd63-53aa-95a3-0cdb28fa8baf"
version = "1.4.0"

[[deps.Bijections]]
git-tree-sha1 = "c9b163bd832e023571e86d0b90d9de92a9879088"
uuid = "e2ed5e7c-b2de-5872-ae92-c73ca462fb04"
version = "0.1.6"

[[deps.BitFlags]]
git-tree-sha1 = "2dc09997850d68179b69dafb58ae806167a32b1b"
uuid = "d1d4a3ce-64b1-5f1a-9ba4-7e7e69966f35"
Expand Down Expand Up @@ -283,6 +294,11 @@ deps = ["Artifacts", "Libdl"]
uuid = "e66e0078-7015-5450-92f7-15fbd957f2ae"
version = "1.0.5+0"

[[deps.CompositeTypes]]
git-tree-sha1 = "02d2316b7ffceff992f3096ae48c7829a8aa0638"
uuid = "b152e2b5-7a66-4b01-a709-34e65c35f657"
version = "0.1.3"

[[deps.ConcreteStructs]]
git-tree-sha1 = "f749037478283d372048690eb3b5f92a79432b34"
uuid = "2569d6c7-a4a2-43d3-a901-331e8e4be471"
Expand Down Expand Up @@ -372,9 +388,9 @@ version = "1.9.1"

[[deps.DiffEqBase]]
deps = ["ArrayInterface", "DataStructures", "DocStringExtensions", "EnumX", "EnzymeCore", "FastBroadcast", "ForwardDiff", "FunctionWrappers", "FunctionWrappersWrappers", "LinearAlgebra", "Logging", "Markdown", "MuladdMacro", "Parameters", "PreallocationTools", "PrecompileTools", "Printf", "RecursiveArrayTools", "Reexport", "SciMLBase", "SciMLOperators", "Setfield", "SparseArrays", "Static", "StaticArraysCore", "Statistics", "Tricks", "TruncatedStacktraces"]
git-tree-sha1 = "af462abaa25b9b9c6cae5730ca387afb4d65382d"
git-tree-sha1 = "8775b80752e9656000ab3800adad8ee22c9cb8f6"
uuid = "2b5f629d-d688-5b77-993f-72d75c75574e"
version = "6.144.2"
version = "6.145.0"

[deps.DiffEqBase.extensions]
DiffEqBaseChainRulesCoreExt = "ChainRulesCore"
Expand Down Expand Up @@ -479,6 +495,12 @@ git-tree-sha1 = "37402c74604d89c94593bc74b3e1ca597494a804"
uuid = "35a29f4d-8980-5a13-9543-d66fff28ecb8"
version = "0.1.18"

[[deps.DomainSets]]
deps = ["CompositeTypes", "IntervalSets", "LinearAlgebra", "Random", "StaticArrays", "Statistics"]
git-tree-sha1 = "51b4b84d33ec5e0955b55ff4b748b99ce2c3faa9"
uuid = "5b8099bc-c8ec-5219-889f-1d9e522a28bf"
version = "0.6.7"

[[deps.Downloads]]
deps = ["ArgTools", "FileWatching", "LibCURL", "NetworkOptions"]
uuid = "f43a241f-c20a-4ad4-852c-f6b1247861c6"
Expand All @@ -490,6 +512,12 @@ git-tree-sha1 = "5837a837389fccf076445fce071c8ddaea35a566"
uuid = "fa6b7ba4-c1ee-5f82-b5fc-ecf0adba8f74"
version = "0.6.8"

[[deps.DynamicPolynomials]]
deps = ["Future", "LinearAlgebra", "MultivariatePolynomials", "MutableArithmetics", "Pkg", "Reexport", "Test"]
git-tree-sha1 = "fea68c84ba262b121754539e6ea0546146515d4f"
uuid = "7c1d4256-1411-5781-91ec-d7bc3513ac07"
version = "0.5.3"

[[deps.EarCut_jll]]
deps = ["Artifacts", "JLLWrappers", "Libdl", "Pkg"]
git-tree-sha1 = "e3290f2d49e661fbd94046d7e3726ffcb2d41053"
Expand Down Expand Up @@ -748,15 +776,15 @@ version = "0.21.0+0"

[[deps.Git]]
deps = ["Git_jll"]
git-tree-sha1 = "d7bffc3fe097e9589145493c08c41297b457e5d0"
git-tree-sha1 = "51764e6c2e84c37055e846c516e9015b4a291c7d"
uuid = "d7ba0133-e1db-5d97-8f8c-041e4b3a1eb2"
version = "1.2.1"
version = "1.3.0"

[[deps.Git_jll]]
deps = ["Artifacts", "Expat_jll", "Gettext_jll", "JLLWrappers", "LibCURL_jll", "Libdl", "Libiconv_jll", "OpenSSL_jll", "PCRE2_jll", "Pkg", "Zlib_jll"]
git-tree-sha1 = "6e93d42b97978709e9c941fa43d0f01701f0d290"
deps = ["Artifacts", "Expat_jll", "JLLWrappers", "LibCURL_jll", "Libdl", "Libiconv_jll", "OpenSSL_jll", "PCRE2_jll", "Zlib_jll"]
git-tree-sha1 = "d8be4aab0f4e043cc40984e9097417307cce4c03"
uuid = "f8c6e375-362e-5223-8a59-34ff63f689eb"
version = "2.34.1+0"
version = "2.36.1+2"

[[deps.Glib_jll]]
deps = ["Artifacts", "Gettext_jll", "JLLWrappers", "Libdl", "Libffi_jll", "Libiconv_jll", "Libmount_jll", "PCRE2_jll", "Zlib_jll"]
Expand Down Expand Up @@ -793,6 +821,18 @@ git-tree-sha1 = "53bb909d1151e57e2484c3d1b53e19552b887fb2"
uuid = "42e2da0e-8278-4e71-bc24-59509adca0fe"
version = "1.0.2"

[[deps.Groebner]]
deps = ["AbstractAlgebra", "Combinatorics", "ExprTools", "Logging", "MultivariatePolynomials", "PrecompileTools", "PrettyTables", "Primes", "Printf", "Random", "SIMD", "TimerOutputs"]
git-tree-sha1 = "6b505ef15e55bdc5bb3ddbcfebdff1c9e67081e8"
uuid = "0b43b601-686d-58a3-8a1c-6623616c7cd4"
version = "0.5.1"

[[deps.GroupsCore]]
deps = ["Markdown", "Random"]
git-tree-sha1 = "6df9cd6ee79fc59feab33f63a1b3c9e95e2461d5"
uuid = "d5909c97-4eac-4ecc-a3dc-fdd0858a4120"
version = "0.4.2"

[[deps.Gumbo]]
deps = ["AbstractTrees", "Gumbo_jll", "Libdl"]
git-tree-sha1 = "a1a138dfbf9df5bace489c7a9d5196d6afdfa140"
Expand Down Expand Up @@ -1037,6 +1077,17 @@ git-tree-sha1 = "50901ebc375ed41dbf8058da26f9de442febbbec"
uuid = "b964fa9f-0449-5b57-a5c2-d3ea65f4040f"
version = "1.3.1"

[[deps.LabelledArrays]]
deps = ["ArrayInterface", "ChainRulesCore", "ForwardDiff", "LinearAlgebra", "MacroTools", "PreallocationTools", "RecursiveArrayTools", "StaticArrays"]
git-tree-sha1 = "f12f2225c999886b69273f84713d1b9cb66faace"
uuid = "2ee39098-c373-598a-b85f-a56591580800"
version = "1.15.0"

[[deps.LambertW]]
git-tree-sha1 = "c5ffc834de5d61d00d2b0e18c96267cffc21f648"
uuid = "984bce1d-4616-540c-a9ee-88d1112d94c9"
version = "0.4.6"

[[deps.Latexify]]
deps = ["Formatting", "InteractiveUtils", "LaTeXStrings", "MacroTools", "Markdown", "OrderedCollections", "Printf", "Requires"]
git-tree-sha1 = "f428ae552340899a935973270b8d98e5a31c49fe"
Expand Down Expand Up @@ -1368,12 +1419,24 @@ git-tree-sha1 = "8d852646862c96e226367ad10c8af56099b4047e"
uuid = "3b2b4ff1-bcff-5658-a3ee-dbcf1ce5ac09"
version = "0.4.4"

[[deps.MultivariatePolynomials]]
deps = ["ChainRulesCore", "DataStructures", "LinearAlgebra", "MutableArithmetics"]
git-tree-sha1 = "6ffb234d6d7c866a75c1879d2099049d3a35a83a"
uuid = "102ac46a-7ee4-5c85-9060-abc95bfdeaa3"
version = "0.5.3"

[[deps.Mustache]]
deps = ["Printf", "Tables"]
git-tree-sha1 = "a7cefa21a2ff993bff0456bf7521f46fc077ddf1"
uuid = "ffc61752-8dc7-55ee-8c37-f3e9cdd09e70"
version = "1.0.19"

[[deps.MutableArithmetics]]
deps = ["LinearAlgebra", "SparseArrays", "Test"]
git-tree-sha1 = "806eea990fb41f9b36f1253e5697aa645bf6a9f8"
uuid = "d8a4904e-b15c-11e9-3269-09a3773c0cb0"
version = "1.4.0"

[[deps.NLSolversBase]]
deps = ["DiffResults", "Distributed", "FiniteDiff", "ForwardDiff"]
git-tree-sha1 = "a0b464d183da839699f4c79e7606d9d186ec172c"
Expand Down Expand Up @@ -1608,9 +1671,9 @@ version = "3.1.0"

[[deps.PlotUtils]]
deps = ["ColorSchemes", "Colors", "Dates", "PrecompileTools", "Printf", "Random", "Reexport", "Statistics"]
git-tree-sha1 = "f92e1315dadf8c46561fb9396e525f7200cdc227"
git-tree-sha1 = "862942baf5663da528f66d24996eb6da85218e76"
uuid = "995b91a9-d308-5afd-9ec6-746e21dbc043"
version = "1.3.5"
version = "1.4.0"

[[deps.Plots]]
deps = ["Base64", "Contour", "Dates", "Downloads", "FFMPEG", "FixedPointNumbers", "GR", "JLFzf", "JSON", "LaTeXStrings", "Latexify", "LinearAlgebra", "Measures", "NaNMath", "Pkg", "PlotThemes", "PlotUtils", "PrecompileTools", "Preferences", "Printf", "REPL", "Random", "RecipesBase", "RecipesPipeline", "Reexport", "RelocatableFolders", "Requires", "Scratch", "Showoff", "SparseArrays", "Statistics", "StatsBase", "UUIDs", "UnicodeFun", "UnitfulLatexify", "Unzip"]
Expand Down Expand Up @@ -1660,19 +1723,14 @@ deps = ["LinearAlgebra", "RecipesBase", "Setfield", "SparseArrays"]
git-tree-sha1 = "a9c7a523d5ed375be3983db190f6a5874ae9286d"
uuid = "f27b6e38-b328-58d1-80ce-0feddd5e7a45"
version = "4.0.6"
weakdeps = ["ChainRulesCore", "FFTW", "MakieCore", "MutableArithmetics"]

[deps.Polynomials.extensions]
PolynomialsChainRulesCoreExt = "ChainRulesCore"
PolynomialsFFTWExt = "FFTW"
PolynomialsMakieCoreExt = "MakieCore"
PolynomialsMutableArithmeticsExt = "MutableArithmetics"

[deps.Polynomials.weakdeps]
ChainRulesCore = "d360d2e6-b24c-11e9-a2a3-2a2ae2dbcce4"
FFTW = "7a1cc6ca-52ef-59f5-83cd-3a7055c09341"
MakieCore = "20f20a25-4f0e-4fdf-b5d1-57303727442b"
MutableArithmetics = "d8a4904e-b15c-11e9-3269-09a3773c0cb0"

[[deps.PositiveFactorizations]]
deps = ["LinearAlgebra"]
git-tree-sha1 = "17275485f373e6673f7e7f97051f703ed5b15b20"
Expand Down Expand Up @@ -1761,6 +1819,12 @@ git-tree-sha1 = "c860e84651f58ce240dd79e5d9e055d55234c35a"
uuid = "74087812-796a-5b5d-8853-05524746bad3"
version = "1.6.2"

[[deps.RandomExtensions]]
deps = ["Random", "SparseArrays"]
git-tree-sha1 = "b8a399e95663485820000f26b6a43c794e166a49"
uuid = "fb686558-2515-59ef-acaa-46db3789a887"
version = "0.4.4"

[[deps.RandomNumbers]]
deps = ["Random", "Requires"]
git-tree-sha1 = "043da614cc7e95c703498a491e2c21f58a2b8111"
Expand Down Expand Up @@ -1892,6 +1956,12 @@ version = "0.5.12"
uuid = "ea8e919c-243c-51af-8825-aaa63cd721ce"
version = "0.7.0"

[[deps.SIMD]]
deps = ["PrecompileTools"]
git-tree-sha1 = "d8911cc125da009051fb35322415641d02d9e37f"
uuid = "fdea26ae-647d-5447-a871-4b548cad5224"
version = "3.4.6"

[[deps.SIMDTypes]]
git-tree-sha1 = "330289636fb8107c5f32088d2741e9fd7a061a5c"
uuid = "94e857df-77ce-4151-89e5-788b33177be4"
Expand Down Expand Up @@ -1999,9 +2069,9 @@ version = "0.8.6"

[[deps.SimpleNonlinearSolve]]
deps = ["ADTypes", "ArrayInterface", "ConcreteStructs", "DiffEqBase", "FiniteDiff", "ForwardDiff", "LinearAlgebra", "MaybeInplace", "PrecompileTools", "Reexport", "SciMLBase", "StaticArraysCore"]
git-tree-sha1 = "d3009620f6aa42016c06bc2aaa766ca8bc4ae5db"
git-tree-sha1 = "1a467a5767d712863e2108e86f7ab103f6d54b13"
uuid = "727e6d20-b764-4bd8-a329-72de5adea6c7"
version = "1.0.3"
version = "1.0.4"

[[deps.SimplePartitions]]
deps = ["AbstractLattices", "DataStructures", "Permutations"]
Expand Down Expand Up @@ -2216,6 +2286,24 @@ git-tree-sha1 = "65f4ed0f9e3125e0836df12c231cea3dd98bb165"
uuid = "2efcf032-c050-4f8e-a9bb-153293bab1f5"
version = "0.3.0"

[[deps.SymbolicUtils]]
deps = ["AbstractTrees", "Bijections", "ChainRulesCore", "Combinatorics", "ConstructionBase", "DataStructures", "DocStringExtensions", "DynamicPolynomials", "IfElse", "LabelledArrays", "LinearAlgebra", "MultivariatePolynomials", "NaNMath", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "TimerOutputs", "Unityper"]
git-tree-sha1 = "849b1dfb1680a9e9f2c6023f79a49b694fb6d0da"
uuid = "d1185830-fcd6-423d-90d6-eec64667417b"
version = "1.5.0"

[[deps.Symbolics]]
deps = ["ArrayInterface", "Bijections", "ConstructionBase", "DataStructures", "DiffRules", "Distributions", "DocStringExtensions", "DomainSets", "DynamicPolynomials", "Groebner", "IfElse", "LaTeXStrings", "LambertW", "Latexify", "Libdl", "LinearAlgebra", "LogExpFunctions", "MacroTools", "Markdown", "NaNMath", "PrecompileTools", "RecipesBase", "Reexport", "Requires", "RuntimeGeneratedFunctions", "SciMLBase", "Setfield", "SparseArrays", "SpecialFunctions", "StaticArrays", "SymbolicIndexingInterface", "SymbolicUtils"]
git-tree-sha1 = "80e67b76699b1ec130ac60946b3d06017f58141f"
uuid = "0c5d862f-8b57-4792-8d23-62f2024744c7"
version = "5.13.0"

[deps.Symbolics.extensions]
SymbolicsSymPyExt = "SymPy"

[deps.Symbolics.weakdeps]
SymPy = "24249f21-da20-56a4-8eb1-6a02cf4ae2e6"

[[deps.TOML]]
deps = ["Dates"]
uuid = "fa267f1f-6049-4f14-aa54-33bafae1ed76"
Expand Down Expand Up @@ -2260,6 +2348,12 @@ git-tree-sha1 = "34cc045dd0aaa59b8bbe86c644679bc57f1d5bd0"
uuid = "731e570b-9d59-4bfa-96dc-6df516fadf69"
version = "0.6.8"

[[deps.TimerOutputs]]
deps = ["ExprTools", "Printf"]
git-tree-sha1 = "f548a9e9c490030e545f72074a41edfd0e5bcdd7"
uuid = "a759f4b9-e2f1-59dc-863e-4aeb61b1ea8f"
version = "0.5.23"

[[deps.TranscodingStreams]]
git-tree-sha1 = "1fbeaaca45801b4ba17c251dd8603ef24801dd84"
uuid = "3bb67fe8-82b1-5028-8e26-92a6c54297fa"
Expand Down Expand Up @@ -2339,6 +2433,12 @@ git-tree-sha1 = "e2d817cc500e960fdbafcf988ac8436ba3208bfd"
uuid = "45397f5d-5981-4c77-b2b3-fc36d6e9b728"
version = "1.6.3"

[[deps.Unityper]]
deps = ["ConstructionBase"]
git-tree-sha1 = "25008b734a03736c41e2a7dc314ecb95bd6bbdb0"
uuid = "a7c27f48-0311-42f6-a7f8-2c11e75eb415"
version = "0.1.6"

[[deps.Unzip]]
git-tree-sha1 = "ca0969166a028236229f63514992fc073799bb78"
uuid = "41fe7b60-77ed-43a1-b4f0-825fd5a5650d"
Expand Down
2 changes: 2 additions & 0 deletions benchmarks/NonlinearProblem/Project.toml
View file
Open in desktop
Original file line number Diff line number Diff line change
Expand Up @@ -13,8 +13,10 @@ Plots = "91a5bcdd-55d7-5caf-9e0b-520d859cae80"
PrettyTables = "08abe8d2-0d0c-5749-adfa-8a2ac140af0d"
SciMLBenchmarks = "31c91b34-3c75-11e9-0341-95557aab0344"
SpeedMapping = "f1835b91-879b-4a3f-a438-e4baacf14412"
SparseDiffTools = "47a9eef4-7e08-11e9-0b38-333d64bd3804"
StaticArrays = "90137ffa-7385-5640-81b9-e52037218182"
Sundials = "c3572dad-4567-51f8-b174-8c6c989267f4"
Symbolics = "0c5d862f-8b57-4792-8d23-62f2024744c7"

[compat]
BenchmarkTools = "1"
Expand Down
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