Return final IPCC-WGI Atlas repository (#17) · SantanderMetGroup/ATLAS@30bba11

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Return final IPCC-WGI Atlas repository (#17)
This is a squash commit of 365 commits in the https://github.com/IPCC-WG1/Atlas repository, from https://github.com/IPCC-WG1/Atlas/tree/138cea27e to v2.0-final

* Update notebooks readme

All notebooks have been collected under the same folder at root level
(#22).

Most notebooks in R and some in Python (#25). The latter left as a
future community effort

* Add regular-CORDEX-grids

to auxiliary-material.

Source: https://is-enes-data.github.io/cordex_archive_specifications.pdf
(Table 2)

* updating script

* updated script

* Delete old materials

* Add geotiff download screenshot and update readme

* Fix missing model_run header in warming levels

* Moving from MED region to the Iberian peninsula

* Delete CMIP5_EC-EARTH_r12i1p1_historical_MED_tas-tasmin-tasmax_1986-2005_JJA.Rdata

* Delete CMIP5_EC-EARTH_r12i1p1_rcp85_MED_tas-tasmin-tasmax_2041-2060_JJA.Rdata

* Delete W5E5_MED_tas-tasmin-tasmax_1986-2005_JJA.Rdata

* Adding new data needed for the bias adjustment notebook

* Simplify notebook code

* Update reference-regions_Python.ipynb

Link to the source netcdf file updated, the file from the auxiliary-material used - auxiliary-material/CMIP6Amon_tas_CanESM5_r1i1p1f1_historical_gn_185001-201412.nc

* Update reference-regions_Python.ipynb

* change metadata headers

* add/modify hatching related scripts/notebooks

* delete

* Add CSV header to reference regions file

This solves task in #17

Also, fix number of commas per row. This enables github rendering and
search features.

* Previous changes of the path to the test file executed in Jupyter notebook

* Update README.md

* Update README.md

* Update README.md

* Update LICENSE.md

* Add extended header information

in regionally-aggregated datasets (#12)

* Update bias-adjustment_R.ipynb

* updated cmip5 inventory versions

* Update BA nb: small editions and clear output

* Update BA nb: small editions and clear output

* Change license header

* Rename notebooks

* Fix link in readme

* Update README.md

* Fix links

* Update README.md

* Update README.md

* Update README.md

* Update README.md

* Update README.md

* Added CMIP6 handles

* fill empty rows due to writing fail

* added html table to readme for cmip6

* removed duplicates

* add stripes script and notebook

* added README.md for cordex inventory

* added README.md for cmip5 inventory

* Create README.md

* Fix link

* Update warming level CSV files

* Update all headers

to include license information and common format including description
and author.

Partly addresses #8 #15 #16

Squashed commit of the following:

commit fe250a6661260e0045d556f3c1df79625eb31ed8
Author: Jesus Fernandez
Date:   Thu Jul 15 00:30:54 2021 +0200

    Change headers bash scripts

commit ff5d3fe52a05f64cdb0d96c0adfe9b737b269a5a
Author: Jesus Fernandez
Date:   Thu Jul 15 00:09:05 2021 +0200

    Change headers of R-files

commit 865976e53de4f974ea36f64e6c72cbf0f363d3f0
Author: Jesus Fernandez
Date:   Wed Jul 14 22:43:34 2021 +0200

    Change headers in notebooks

commit d104ee4ad95fe7b53bd21c22cd3f2c86fef200f6
Author: Jesus Fernandez
Date:   Wed Jul 14 21:51:14 2021 +0200

    Replace headers

* Add zenodo.json file skeleton

* Update notebook list in README

* Upate description in bias_correction_isimip3.R

* Update bias_correction_isimip3.R

* Update AtlasCDOremappeR_CMIP.sh

* change lines to skip due to header update in datasets

* Headers of the interpolation scripts and README.md changed

* README.md updated - a broken link changed

* added prsn,ph,sfcWind to cmip6

* changed to markdown

* Update README.md

* change paths to local

* updeate header comments

* update

* add lines to generaty binary masks

* minor, change skip to comment.char

* minor, change skip to comment.char

* minor changes

* Update .zenodo.json

* Fit to AR5 historical period

* AtlasCDOremappeR_CMIP.sh updated

 Small changes in the header and the script structure

* Fix script author

* Add script inventory to README file

testing #25 proposal

* Update README.md

* Update README.md

* Update README.md

* Update README.md

* Fix missing boxplot figure

* Update .zenodo.json

* Delete reproducibility folder

* Update README.md

* Rename inventory -> data-sources

* Update README.md

* added html table

* use raw githack

* Fix

* Update LICENSE.md

* Update LICENSE.md

* Update LICENSE.md

* Update LICENSE.md

* Update LICENSE.md

* Update LICENSE.md

* Update LICENSE.md

* Update bias-adjustment_R.ipynb

* Update bias-adjustment_R.ipynb

* Update bias-adjustment_R.ipynb

* Fixed cmip6

* Update README.md

* added htmls

* added dois

* fix

* Rename DOI table

* Update LICENSE.md

* Update LICENSE.md

* fix precipitation offset plotting

* add EC-EARTH_r3i1p1

* Update LICENSE.md

* remove discarded FGOALS-g2_r1i1p1

* remove discarded model FGOALS-g2

* Update issue templates

* Fit to AR5 historical period

* Update problem-report.md

* Update problem-report.md

* Add CONTRIBUTING.md

* remove discarded models (checked with excel tables)

* Add es-doc errata pointer (#25)

* Update README.md

* Update AtlasCDOremappeR_CORDEX.sh

Name of the python script "fix_grid.py" changed to "grid_bounds_calc.py".

* Add CDO version info and documentation DOI (#25)

* ESGF card in repo scheme

* Update issue templates

use errata label

* Update CONTRIBUTING.md

Fix issue label

* Update CONTRIBUTING.md

* Update CONTRIBUTING.md

* warming-levels review (#41)

Squash commit addressing #16 and fixing some aggregated data files extending in time beyond the expected limits for historical and scenario simulations.

* Update example with EC-EARTH model

* Fit FGOALS-g3 to AR6 historical period

* Include world.annual.mean.R in getGWL.R file

* Source utility function

* Add GWL time series plot script

* README update

* Delete old GWL spread plots

* Add new GWL spread plots

* README update

* Minor change

* Fix CMIP5_HadGEM2 files

Historical period dates (2005-12) were included in future scenario data.

* Update RCP45 gwl spread plots after commit 097f444

Co-authored-by: Jesus Fernandez <[email protected]>

* description of the scripts

* Update problem-report.md

* Update CONTRIBUTING.md

* Update README.md

* Update README.md

* Update LICENSE.md

* Update LICENSE.md

* Update LICENSE.md

* readme in observations

* Update README.md

* Update LICENSE.md

* Update README.md

* Update README.md

* Update README.md

* Update README.md

* Update README.md

* Update README.md

* Update README.md

* Clean notebook

* Update repo scheme

* Update README.md

with example parameter setting to create the figure in the README

* Clean notebook on hatching-uncertainty

* Update reference-grids_R.ipynb

Reducing the period of analysis to avoid memory crash.

* Update gwl notebook

* Update reference-grids_R.ipynb

* Update reference-grids_R.ipynb

* Update reference-grids_R.ipynb

* Delete reproducibility directory

* update

* Clean load-remote-data notebook

* Rename CONTRIBUTING.md to ERRATA.md

* Avoid warnings

* clear long output

* Set default to CMIP6

* Update load-remote-data notebook

and nc files. With panel headers and global dataset metadata in the nc

* replace data used in the linear trends notebook, from .rda format to .nc4

* Remove chunking from load-remote-data

improves remote data access speed

Also, add member names to netcdf

* Add SCDS prologue to remote-data-access UDG

* Update README.md

* replace Rdata by netCDF files

* Update README.md

* Update README.md

* Update ERRATA.md

* Update ERRATA.md

* Update README.md

* Update README.md

* Update README.md

* Update ERRATA.md

* Update AtlasCDOremappeR_CMIP6_Omon.sh

Bug related with "cdo setgrid"  fixed and the corresponding part rearranged, additional descriptions given.

* minor: fix last latitude value to keep regularity

* Update README.md

* Update README.md

* update

* update

* updated but not final

* add auxiliary data

* add

* raname to change data

* add

* change data to SAM

* update

* update

* update

* update

* Update .zenodo.json

* Update .zenodo.json

* Update README.md

* Add binder/README

* Adding support for binder

Added Dockerfile for binder.

* Update README.md

* Clean stripes-plots notebook

and fix typo in computeStripes.R

* Clean notebooks

* update

* update

* fix errata

* Update Dockerfile

* major updates

* use aggregate.spatial

* Suppress warnings in notebook

* Update reference-regions_R

* Recover reproducibility/ folder

* Update linear-trends_R

* Update hatching-uncertainty notebook

* Update linear-trends_R notebook

* Delete load-remote-data_R

there are examples of remote data loading in the bias-adjustment nb.

* Update README.md

Add binder/ folder description

* Update README.md

* Update README.md

* Update README.md

* Update README.md

* Update README.md

* Update README.md

* Update README.md

* Update README.md

* Update README.md

* Update README.md

* Update README.md

* Update README.md

* Update README.md

* Update README.md

* Align with tables in Supplementary Material

* Rename boxplots -> projections

* Update README.md

Final MyBinder badge

* Remove file without confirmed authorship

* Update .zenodo.json

* fix typo

* Update README.md

Co-authored-by: JavierDiezSierra <[email protected]>
Co-authored-by: jbedia <[email protected]>
Co-authored-by: Rodrigo Manzanas <[email protected]>
Co-authored-by: Josipa Milovac <[email protected]>
Co-authored-by: Maialen Iturbide <[email protected]>
Co-authored-by: Josipa Milovac <[email protected]>
Co-authored-by: Jose M. Gutierrez <[email protected]>
Co-authored-by: zequihg50 <[email protected]>
Co-authored-by: anacv <[email protected]>
Co-authored-by: Ana Casanueva <[email protected]>
Co-authored-by: Antonio S. Cofiño <[email protected]>
Co-authored-by: Jorge Bano Medina <[email protected]>
Co-authored-by: Jorge Baño-Medina <[email protected]>