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Development #214

Merged
merged 57 commits into from
Apr 28, 2023
Merged

Development #214

merged 57 commits into from
Apr 28, 2023

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dimtsap
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@dimtsap dimtsap commented Apr 28, 2023

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shellshocked2003 and others added 30 commits November 6, 2021 16:26
@shellshocked2003
Changes to RunModel to execute tiled MPI jobs on Frontera
d52d06f
Changes to run on Frontera: separate preprocessing, model run, and po…
a023a25 
…st processing to only use ibrun on computationally intensive portions
@shellshocked2003
Merge remote-tracking branch 'upstream/master' into frontera
179306f
@shellshocked2003
Adding cluster execution model
8dc7cd4
@shellshocked2003
Merge remote-tracking branch 'upstream/master' into frontera
283f40a
@shellshocked2003
Update to fix issue related to Iterable
bc6fda0
@shellshocked2003
Finished adding cluster exectution model, will test multi-node deploy…
8d93c72 
…ment on HPC next
@dimtsap
Adds Parallel and Sequential Tempering files
cfdf3df
@dimtsap
Starts TMCMC porting
b87cf47
@dimtsap
Ports ParallelTemperingMCMC.py to v4
e758876
@dimtsap
Ports SequentialTemperingMCMC.py to v4
1b479bd
@dimtsap
Port TMCMC examples to v4
8982763
@dimtsap
Moves TemperingMCMC files inside mcmc folder
8fae052
@dimtsap
Allows either a single MCMC sampler or list to be provided in Paralle…
8917c83 
…lTemperingMCMC.py
@dimtsap
Correction for FORM
02a53b6
@shellshocked2003
Added documentation and example for launching parallel job on cluster
d7db12b
@shellshocked2003
Merge remote-tracking branch 'upstream/master' into frontera
d897bfc
@AudOlivier
first try at tempering / parallel tempering docstrings
5e9dbed
@AudOlivier
tempering and parallel tempering documentation
885bcfd
@AudOlivier
parallel tempering docstrings: changes to output docs
21fb695
@shellshocked2003
Update run_script.sh to tile jobs using bash loop and mpirun
0fcdb28
@dimtsap
Merge remote-tracking branch 'origin/feature/v4/TMCMC' into feature/v…
1cf219e 
…4/TMCMC
@promitchakroborty
STMCMC bug fixes and unit tests
ed1b5bd
@promitchakroborty
STMCMC documentation and docstrings
8921f9b
@dimtsap
Merge remote-tracking branch 'origin/feature/v4/TMCMC' into feature/v…
3d87f70 
…4/TMCMC
@dimtsap
Finalizes TMCMC docs
6e2f2b7
@dimtsap
Merge remote-tracking branch 'origin/Development' into feature/v4/TMCMC
475df6c 
# Conflicts:
#	docs/source/bibliography.bib
@dimtsap
Merge pull request #196 from shellshocked2003/frontera
291bd55 
Frontera
@dimtsap
Merge branch 'Development' into feature/RunModel_updates
15cbf30
@dimtsap
Minor formatting changes in cluster execution example
c8db82e
promitchakroborty and others added 27 commits March 10, 2023 13:51
@promitchakroborty
STMCMC test error debug push
accae15
@promitchakroborty
Merge remote-tracking branch 'origin/feature/v4/TMCMC' into feature/v…
9533703 
…4/TMCMC
@promitchakroborty
STMCMC test error debug push 2
e5ee158
@dimtsap
Updates test values @promitchakroborty
dec5d72
@dimtsap
Updates numpy version from 1.21.4 to 1.24.2
bdba54a
@dimtsap
Updates numpy version from 1.24.2 to 1.22.0
ee6540a
@dimtsap
Merge branch 'Development' into feature/v4/TMCMC
15e8d4d
@dimtsap
Merge pull request #202 from SURGroup/feature/v4/TMCMC
45f446c 
Feature/v4/tmcmc
@dimtsap
Merge branch 'Development' into feature/RunModel_updates
e6c48a2
@dimtsap
Merge pull request #205 from SURGroup/feature/RunModel_updates
9e5f072 
Feature/run model updates
@dimtsap
Adds missing file copy in ClusterExecution.py
d8f2de0
@NovakLBUT
New functions for PCE basis
fd26576
@NovakLBUT
Active learning for PCE Class
b4502ed
@dimtsap
Minor naming conventions changes
1790f37
@dimtsap
Adds theta criterion PCE to __init__.py
07d2673
@NovakLBUT
Update test_pce.py
441e35b 
new unit test for active learning
@NovakLBUT
Update ThetaCriterionPCE.py
e33a673 
Added description of optional parameter
@NovakLBUT
Example for Theta Criterion
1697947
@dimtsap
Fixes failing ThetaCriterion test
f52aa94
@dimtsap
Updates documentation files
e859d3c
@NovakLBUT
Added one unit test for standardization
6284575
@NovakLBUT
Update documentation of ThetaActiveLearning
e059b2e
@dimtsap
Updates standardization code for Uniform and Normal
36269b1
@dimtsap
Merge pull request #212 from SURGroup/feature/Active_Learning_PCE
888209e 
Feature/active learning pce
@dimtsap
+semver: minor
4724b58
@dimtsap
Merge pull request #213 from SURGroup/feature/increment_minor_version
9fe7e31 
Increments minor semantic version
@dimtsap
Merge branch 'master' into Development
bb2c0ce
@sonarqubecloud
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Kudos, SonarCloud Quality Gate passed!    Quality Gate passed

Bug A 0 Bugs
Vulnerability A 0 Vulnerabilities
Security Hotspot A 0 Security Hotspots
Code Smell A 16 Code Smells

81.5% 81.5% Coverage
0.0% 0.0% Duplication

@dimtsap dimtsap merged commit c2f3e5c into master Apr 28, 2023
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5 participants
@dimtsap @shellshocked2003 @AudOlivier @promitchakroborty @NovakLBUT