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@tznind tznind released this 14 Sep 15:19
v1.12.0
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Learn about vigilant mode.

NOTE - package smi-services-linux-x64-v1.12.0.tar.gz below contains a broken version of the MongoDBPopulator service. Please use a version of this in a later release

Changelog

Added

  • [breaking] Add identifiable extraction support
    • New service "FileCopier" which sits in place of CTP for identifiable extractions and copies source files to their output dirs
    • Changes to MongoDB extraction schema, but backwards compatibility has been tested
    • RabbitMQ extraction config has been refactored. Queues and service config files need to be updated
  • Add SecurityCodeScan tool to build chain for .NET code
  • Add "no filters" extraction support. If specified when running ExtractorCLI, no file rejection filters will be applied by CohortExtractor. True by default for identifiable extractions
  • Added caching of values looked up in NLP/rulesbase for IsIdentifiable tool
  • Added new rejector that throws out values (e.g. patient IDs) whose IDs are stored in a database table. Set RejectColumnInfos option in yaml to enable this
  • Added a check to QueryToExecuteResult for RejectReason being null when Reject is true.

Changed

  • [breaking] Environment variables are no longer required. Previous settings now appear in configuration file
    • Environment variable SMI_LOGS_ROOT is now GlobalOptions.LogsRoot
    • Environment variable MONGO_SERVICE_PASSWORD is now MongoDbOptions.Password
    • Removed ISIDENTIFIABLE_NUMTHREADS as it didn't work correctly anyway
  • Extraction report: Group PixelData separately and sort by length
  • IsIdentifiable Reviewer 'Symbols' rule factory now supports digits only or characters only mode (e.g. use \d for digits but leave characters verbatim)
  • IsIdentifiable Reviewer 'symbols' option when building Regex now builds capture groups and matches only the failing parts of the input string not the full ProblemValue. For example MR Head 12-11-20 would return (\d\d-\d\d-\d\d)$

Fixed

  • Fix the extraction output directory to be <projId>/extractions/<extractname>

Dependencies

  • Bump fo-dicom.Drawing from 4.0.5 to 4.0.6
  • Bump fo-dicom.NetCore from 4.0.5 to 4.0.6
  • Bump HIC.BadMedicine.Dicom from 0.0.6 to 0.0.7
  • Bump HIC.DicomTypeTranslation from 2.3.0 to 2.3.1
  • Bump HIC.FAnsiSql from 1.0.2 to 1.0.5
  • Bump HIC.RDMP.Dicom from 2.1.6 to 2.1.10
  • Bump HIC.RDMP.Plugin from 4.1.6 to 4.1.8
  • Bump HIC.RDMP.Plugin.Test from 4.1.6 to 4.1.8
  • Bump Microsoft.CodeAnalysis.CSharp.Scripting from 3.6.0 to 3.7.0
  • Bump Microsoft.Extensions.Caching.Memory from 3.1.6 to 3.1.8
  • Bump Microsoft.NET.Test.Sdk from 16.6.1 to 16.7.1
  • Bump MongoDB.Driver from 2.11.0 to 2.11.2
  • Bump System.IO.Abstractions from 12.1.1 to 12.1.9
  • Bump System.IO.Abstractions.TestingHelpers from 12.1.1 to 12.1.9
  • Bump Terminal.Gui from 0.81.0 to 0.89.4
Assets 7
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