Code

[WIP] Stan backend#347

Code

Open

hyunjimoon wants to merge 51 commits intoSDXorg:masterSDXorg/pysd:masterfrom hyunjimoon:stan-backendhyunjimoon/pysd:stan-backendCopy head branch name to clipboard

+15,882

Commits

Commits on Jul 13, 2022

• Initial implementation of stan translator

  Dashadower

  committed
  0ee4580

  Copy full SHA for 0ee4580

Commits on Jul 21, 2022

• Update testing.py

  hyunjimoon

  authored
  73db7e8

  Copy full SHA for 73db7e8

• change model input and output signature

  Show description for 6246c21
  hyunjimoon

  authored
  6246c21

  Copy full SHA for 6246c21

Commits on Jul 24, 2022

• Add LOOKUP implementation. Refactor AST walkers to classes

  Dashadower

  committed
  b651530

  Copy full SHA for b651530

• Automatically identify stock variables and initial values

  Dashadower

  committed
  64eb140

  Copy full SHA for 64eb140

• WIP static RNG function

  Dashadower

  committed
  4f1e37e

  Copy full SHA for 4f1e37e

Commits on Jul 31, 2022

• Update test models and initial value generation

  Dashadower

  committed
  e912553

  Copy full SHA for e912553

• Allow non-default outcome variable passage

  Dashadower

  committed
  e7fa259

  Copy full SHA for e7fa259

• Add missing semicolon

  Dashadower

  committed
  8c9f767

  Copy full SHA for 8c9f767

• Add float to auxillary name walker

  Dashadower

  committed
  ce5bc65

  Copy full SHA for ce5bc65

• Update explanation on outcome signature

  hyunjimoon

  authored
  f37c720

  Copy full SHA for f37c720

Commits on Aug 1, 2022

• Readme for PR preparation

  hyunjimoon

  authored
  2903470

  Copy full SHA for 2903470

• Update readme.md

  hyunjimoon

  authored
  02971a3

  Copy full SHA for 02971a3

• Update readme.md

  hyunjimoon

  authored
  46df7c6

  Copy full SHA for 46df7c6

• Merge branch 'master' of https://github.com/Dashadower/pysd into stan-backend

  

  hyunjimoon

  committed
  3569efd

  Copy full SHA for 3569efd

Commits on Aug 7, 2022

• Extend to Hierarchical models

  

  hyunjimoon

  committed
  12039a9

  Copy full SHA for 12039a9

Commits on Aug 11, 2022

• Substitute match with isinstance.

  Dashadower

  committed
  1903312

  Copy full SHA for 1903312

• Autoformat with black

  Dashadower

  committed
  af542c4

  Copy full SHA for af542c4

• Minor update to logic

  Dashadower

  committed
  c744e17

  Copy full SHA for c744e17

Commits on Aug 18, 2022

• Add demand_supply model workflow in notebook file

  hyunjimoon

  committed
  b6305e5

  Copy full SHA for b6305e5

• Relocate notebook file

  hyunjimoon

  committed
  76eea02

  Copy full SHA for 76eea02

• Update return signature of ode function and change deprecated stan functions

  Dashadower

  committed
  ae761d3

  Copy full SHA for ae761d3

• Change output signature of ode call

  Dashadower

  committed
  dc961b6

  Copy full SHA for dc961b6

• Update notebook to include full flow

  hyunjimoon

  committed
  8cd38f2

  Copy full SHA for 8cd38f2

• Merge branch 'stan-backend' of github.com:hyunjimoon/pysd into stan-backend

  hyunjimoon

  committed
  7f9e56c

  Copy full SHA for 7f9e56c

• Add tables to workflow

  hyunjimoon

  committed
  76f5485

  Copy full SHA for 76f5485

Commits on Aug 19, 2022

• Update notebook for relation input (issue SDXorg#16)

  hyunjimoon

  committed
  c921d21

  Copy full SHA for c921d21

Commits on Aug 22, 2022

• WIP stan model interface

  Dashadower

  committed
  ad76f2a

  Copy full SHA for ad76f2a

Commits on Aug 27, 2022

• Two not compile tested stan files

  hyunjimoon

  committed
  b3c5a1f

  Copy full SHA for b3c5a1f

Commits on Aug 29, 2022

• data2draws implementation

  Dashadower

  committed
  1d9545e

  Copy full SHA for 1d9545e

• Updates to data2draws

  Dashadower

  committed
  a009a47

  Copy full SHA for a009a47

Commits on Aug 31, 2022

• Check if variables with priors exist in the ODE function declaration

  

  Shinyoung Kim

  authored and

  Dashadower

  committed
  161e55e

  Copy full SHA for 161e55e

• Update codegen to match stan 2.30

  Dashadower

  committed
  9d8e1f2

  Copy full SHA for 9d8e1f2

• Update lookup codegen logic and create cmdstan model

  Dashadower

  committed
  5584248

  Copy full SHA for 5584248

• Change filename

  Dashadower

  committed
  09c6086

  Copy full SHA for 09c6086

• Six manual comments each for draws2data and data2draws

  hyunjimoon

  committed
  e2d4df8

  Copy full SHA for e2d4df8

• Add files via upload

  hyunjimoon

  authored
  3227876

  Copy full SHA for 3227876

• Six comments each for interface upgrade

  hyunjimoon

  authored
  fd5e4c1

  Copy full SHA for fd5e4c1

Commits on Sep 1, 2022

• implement draws2data

  hyunjimoon

  committed
  2ff05de

  Copy full SHA for 2ff05de

• Merge branch 'stan-backend' into stan-backend-d2d

  hyunjimoon

  authored
  4ba4e81

  Copy full SHA for 4ba4e81

• Merge pull request #1 from hyunjimoon/stan-backend-d2d

  Show description for ad4b855
  hyunjimoon

  authored
  ad4b855

  Copy full SHA for ad4b855

• Add constraints to parameters and better input data integration

  Dashadower

  committed
  5f1b79a

  Copy full SHA for 5f1b79a

• Change stan model directory

  Dashadower

  committed
  d57897c

  Copy full SHA for d57897c

• Update data block

  Dashadower

  committed
  c0f88e1

  Copy full SHA for c0f88e1

Commits on Sep 6, 2022

• Codegen cleanup and draws2data implementation

  Dashadower

  committed
  53febea

  Copy full SHA for 53febea

Commits on Sep 11, 2022

• Rearrange vensim file structure

  hyunjimoon

  committed
  bd75d72

  Copy full SHA for bd75d72

• Update draws2data

  Dashadower

  committed
  83440b0

  Copy full SHA for 83440b0

• Merge branch 'stan-backend' of https://github.com/hyunjimoon/pysd into stan-backend

  Dashadower

  committed
  156b6ac

  Copy full SHA for 156b6ac

Commits on Sep 16, 2022

• Three checks with draws2data, data2draws function

  hyunjimoon

  authored
  f638ac5

  Copy full SHA for f638ac5

Commits on Sep 18, 2022

• Bug fix and analysis notebook for preypredator

  hyunjimoon

  committed
  53a2576

  Copy full SHA for 53a2576

Commits on Sep 20, 2022

• Merge remote-tracking branch 'upstream/master' into stan-backend

  Dashadower

  committed
  c022c72

  Copy full SHA for c022c72