deal with new ruff version and next try for tutorial-test.yml

[sroet]

this is the next try at testing the tutorial, will now only trigger on pushes to main.
(will have to merged before it triggers)

might solve #148

Also tries to fix the ruff issues with the added ipynb (a new ruff version has released with ipynb linting enabled) and updates the pre-commit hook

Also updates minimal coverage to 87%

[github-actions]

File	Coverage		Missing
All files	88%	✅
src/pytom_tm/correlation.py	85%	❌	98-99 131
src/pytom_tm/entry_points.py	79%	❌	28 113-130 235-280 385-404 540-558 1038-1049
src/pytom_tm/extract.py	76%	❌	127-138 205-212 256-261 354-372
src/pytom_tm/io.py	81%	❌	20 40 58 76 89 110-116 133-137 144 150 162 169 216-218 288 434-442 467
src/pytom_tm/mask.py	80%	❌	76 94 104-105
src/pytom_tm/parallel.py	89%	✅	14-15 93 104-105 111 176
src/pytom_tm/plotting.py	16%	❌	19-21 24-31 35-43 47-50 53-69 72-73 76-77 97-102 118-126 132-149 164-172 176-193 197-205 209-216 222 228 233 247-397
src/pytom_tm/tmjob.py	97%	✅	372-373 389 399-404 483 611 660
src/pytom_tm/utils.py	78%	❌	18-20
src/pytom_tm/weights.py	96%	✅	59 314-318 325 535 540 545

Minimum allowed coverage is 86%

Generated by 🐒 cobertura-action against eb44e3f

[McHaillet]

Do all the double quotes also need to be escaped?

[McHaillet]

Nvm, they are inside double quotes

[sroet]

yeah, the double quotes and \n is how an ipynb looks like outside of jupyter

[McHaillet]

LGTM and anyway need to try the workflow