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expose tophat kernel connectivity and make n-false-postives a float #166

Merged

McHaillet merged 9 commits into SBC-Utrecht:main from McHaillet:test_tophat_kernel

May 8, 2024

Merged

expose tophat kernel connectivity and make n-false-postives a float #166

Merge branch 'main' into test_tophat_kernel

GitHub Actions / coverage succeeded May 8, 2024 in 0s

coverage

File	Coverage		Missing
All files	`81%`	✅
src/pytom_tm/angles.py	`94%`	✅	`44`
src/pytom_tm/correlation.py	`85%`	✅	`94-95` `126`
src/pytom_tm/entry_points.py	`70%`	❌	`27` `104-121` `290-350` `439-454` `564-580` `829-897` `938-949`
src/pytom_tm/extract.py	`73%`	❌	`110-121` `176-183` `209-212` `284-302`
src/pytom_tm/io.py	`48%`	❌	`15-19` `25-28` `34-37` `43-46` `52-55` `62-66` `74-87` `93-100` `107-114` `129-131` `184` `218-219` `261-263` `279` `295` `312-321` `341-346`
src/pytom_tm/mask.py	`80%`	✅	`70` `85` `94-95`
src/pytom_tm/parallel.py	`84%`	✅	`14-15` `81-87` `95-97` `104` `109` `148`
src/pytom_tm/plotting.py	`16%`	❌	`20-22` `25-32` `36-44` `48-51` `54-70` `73-74` `77-78` `98-103` `119-127` `133-150` `165-173` `177-194` `198-206` `210-217` `223` `229` `234` `248-398`
src/pytom_tm/template.py	`57%`	❌	`57-58` `67` `76-87` `92-97` `107-112` `114`
src/pytom_tm/tmjob.py	`96%`	✅	`177-178` `190` `196-198` `201` `334` `374`
src/pytom_tm/utils.py	`78%`	❌	`16-18`
src/pytom_tm/weights.py	`96%`	✅	`61` `292-293` `300` `480` `483` `486`

Minimum allowed coverage is 80%

Generated by 🐒 cobertura-action against c31e8aa

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