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change 'ptm' to 'rln' in the extraction star file #149

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sroet merged 1 commit into SBC-Utrecht:main from sroet:swap_ptm_to_rln

Mar 26, 2024

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sroet commented Mar 26, 2024

should close #93

@McHaillet I did not see any other reference to 'ptm', however these do not have the underscore, is that correct?


          change 'ptm' to 'rln' in the extraction star file

1013eb7

sroet requested a review from McHaillet

March 26, 2024 16:19

github-actions bot commented Mar 26, 2024

File	Coverage		Missing
All files	`80%`	✅
src/pytom_tm/angles.py	`94%`	✅	`44`
src/pytom_tm/correlation.py	`85%`	✅	`94-95` `126`
src/pytom_tm/entry_points.py	`68%`	❌	`27` `104-121` `283-342` `431-446` `543-558` `792-859` `900-911`
src/pytom_tm/extract.py	`73%`	❌	`107-118` `170-176` `202-205` `277-295`
src/pytom_tm/io.py	`48%`	❌	`15-19` `25-28` `34-37` `43-46` `52-55` `62-66` `74-87` `93-100` `107-114` `129-131` `184` `218-219` `261-263` `279` `295` `312-321` `341-346`
src/pytom_tm/mask.py	`80%`	✅	`70` `85` `94-95`
src/pytom_tm/matching.py	`95%`	✅	`186-196` `340`
src/pytom_tm/parallel.py	`84%`	✅	`14-15` `81-87` `95-97` `104` `109` `148`
src/pytom_tm/plotting.py	`16%`	❌	`20-22` `25-32` `36-44` `48-51` `54-70` `73-74` `77-78` `98-103` `119-127` `133-150` `165-173` `177-194` `198-206` `210-217` `223` `229` `234` `248-398`
src/pytom_tm/template.py	`57%`	❌	`57-58` `67` `76-87` `92-97` `107-112` `114`
src/pytom_tm/tmjob.py	`96%`	✅	`170-171` `183` `189-191` `194` `327` `367`
src/pytom_tm/utils.py	`78%`	❌	`16-18`
src/pytom_tm/weights.py	`96%`	✅	`61` `292-293` `300` `479` `482` `485`

Minimum allowed coverage is 79%

Generated by 🐒 cobertura-action against 1013eb7

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McHaillet commented Mar 26, 2024

@McHaillet I did not see any other reference to 'ptm', however these do not have the underscore, is that correct?

Yep, that's right. starfile adds the underscore before the column headers!

McHaillet approved these changes

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McHaillet left a comment

LGTM

sroet merged commit 4785f00 into SBC-Utrecht:main

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sroet deleted the swap_ptm_to_rln branch

March 26, 2024 17:12

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