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Intergenic variant details #109

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sksmi opened this issue Nov 2, 2020 · 3 comments
Closed

Intergenic variant details #109

sksmi opened this issue Nov 2, 2020 · 3 comments
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@davmlaw
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sksmi commented Nov 2, 2020

DL Nov 2019:
Currently, if no variant annotation transcript we show:
"Variant is intergenic, so no transcript or gene information is available. "

But there are some intergenic annotations - ie gnomad, external data etc etc. We should show if intergenic and divide up sections into needs transcript or not and hide them if not needed.

See also VG issue 2116 Transcript select - annotations w/o transcripts
@sksmi sksmi added this to the VG 3.0 milestone Nov 2, 2020
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sksmi commented Nov 2, 2020

Transferred from VG issue 2115.

@davmlaw davmlaw modified the milestones: VG 3.0, SA Path Training, SA Path VEP upgrade Dec 8, 2020
@davmlaw davmlaw modified the milestones: SA Path VEP upgrade, SA Path VG 3.1 Jun 25, 2021
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davmlaw commented Sep 21, 2022

An example integenic variant that has gnomAD data is NC_000011.10:g.34758731G>A

davmlaw added a commit that referenced this issue Oct 11, 2022
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#109 - Intergenic variant details
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davmlaw commented Nov 3, 2022

Confirmed it showed limited stuff and warning on page:

https://variantgrid.com/variantopedia/view_variant/250698650

@davmlaw davmlaw closed this as completed Nov 3, 2022
Bharath-kandula added a commit that referenced this issue Sep 12, 2023
@Bharath-kandula
#109 condition override blank condition
f64ac04
TheMadBug pushed a commit that referenced this issue Sep 12, 2023
@Bharath-kandula
#109 Condition matching to override blank condition (#886)
9e02f36 
* #3384 fixed discordance weekly email table heading

* #109 condition override blank condition
TheMadBug pushed a commit that referenced this issue Sep 12, 2023
@Bharath-kandula @TheMadBug
#109 Condition matching to override blank condition (#886)
5a1937b 
* #3384 fixed discordance weekly email table heading

* #109 condition override blank condition
Bharath-kandula added a commit that referenced this issue Sep 18, 2023
@Bharath-kandula
#109 showing suggestion.condition_multi_operation.label
74570fb
TheMadBug pushed a commit that referenced this issue Sep 18, 2023
@Bharath-kandula
#3023 condition text to accept multiple terms and auto assign (#897)
2458854 
* #3023 condition text to accept multiple terms and auto assign

* #109 showing suggestion.condition_multi_operation.label
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