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crucible-jvm: Migrate never-updated fields from CodebaseState to Code…
…base `Lang.JVM.Codebase` has a `CodebaseState` data type that is used within an `IORef` in `Codebase`. However, only two of the four fields of `CodebaseState` are ever updated with `writeIORef`, so it doesn't make much sense to keep the other two fields in an `IORef`. This patch moves them from `CodebaseState` to `Codebase` to make this more obvious. This is purely a refactoring and has no user-visible changes in behavior.
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