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Parse xyz for a species from a file#70

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alongd merged 5 commits intomasterReactionMechanismGenerator/ARC:masterfrom parse_xyzReactionMechanismGenerator/ARC:parse_xyzCopy head branch name to clipboardFeb 25, 2019

+11,076-86

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Commits on Feb 25, 2019

• Parse species xyz from file

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• Tests: test both parser and species for parsing xyz from file

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• Minor: relocated invalidated for rotors in Scheduler

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• Minor: change order of ESS check in scan software determination

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• Relocated get_xyz_string and get_xyz_matrix

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