RabbitBAM-QC

Efficient QC for BAM files with RabbitBAM I/O library

Dependancy

• gcc 8.5.0 or newer
• htslib 1.15 or newer
• libdeflate 1.12 or newer
• RabbitBAM

Installation

git clone https://github.com/RabbitBio/RabbitBAM-QC
cd RabbitBAM-QC
bash configure.sh <path-to-htslib-installation-directory> <path-to-RabbitBAM-installation-directory> <path-to-libdeflate-installation-directory>
source env.sh
make clean && make

Usage

refer to ./bam_qc -h