#332 miRBase - standardize to kg_jsonl for JSON Lines representation

RTXteam · Jul 26, 2023 · 19f622d · 19f622d
1 parent 34bef3d
commit 19f622d
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diff --git a/.github/workflows/main.yml b/.github/workflows/main.yml
@@ -35,6 +35,6 @@ jobs:
       run: |
         cd /home/runner/work/RTX-KG2/RTX-KG2/RTX-KG2
         bash -x ./extract-mirbase.sh ~/kg2-build/miRNA.dat
-        ~/kg2-venv/bin/python3 -u mirbase_dat_to_kg_json.py ~/kg2-build/miRNA.dat ~/kg2-build/kg2-mirbase-nodes.jsonl ~/kg2-build/kg2-mirbase-edges.jsonl --test
+        ~/kg2-venv/bin/python3 -u mirbase_dat_to_kg_jsonl.py ~/kg2-build/miRNA.dat ~/kg2-build/kg2-mirbase-nodes.jsonl ~/kg2-build/kg2-mirbase-edges.jsonl --test
         ~/kg2-venv/bin/python3 -u report_stats_on_kg_jsonl.py ~/kg2-build/kg2-mirbase-nodes.jsonl ~/kg2-build/kg2-mirbase-edges.jsonl ~/kg2-build/kg2-mirbase-report.json
         cat ~/kg2-build/kg2-mirbase-report.json
diff --git a/mirbase_dat_to_kg_json.py → mirbase_dat_to_kg_jsonl.py b/mirbase_dat_to_kg_json.py → mirbase_dat_to_kg_jsonl.py