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RTIInternational · Jan 4, 2025 · ba0f78d · ba0f78d
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Showing 8 changed files with 967 additions and 49 deletions.
diff --git a/File/index.html b/File/index.html
@@ -152,6 +152,11 @@
   </a>
 </li>
 <li class="md-nav__item">
+<a class="md-nav__link" href="#usages">
+    Usages
+  </a>
+</li>
+<li class="md-nav__item">
 <a class="md-nav__link" href="#comments">
     Comments
   </a>
@@ -205,7 +210,7 @@
 <svg viewbox="0 0 24 24" xmlns="http://www.w3.org/2000/svg"><path d="M20.71 7.04c.39-.39.39-1.04 0-1.41l-2.34-2.34c-.37-.39-1.02-.39-1.41 0l-1.84 1.83 3.75 3.75M3 17.25V21h3.75L17.81 9.93l-3.75-3.75L3 17.25Z"></path></svg>
 </a>
 <h1 id="class-file">Class: File</h1>
-<p><em>Abstract class for various kinds of files. Subclasses will be defined for specific file types.</em></p>
+<p><em>Abstract class for various kinds of files. Subclasses may be defined for specific file types.</em></p>
 <p>URI: <a href="https://w3id.org/nhlbidatastage/bdchm/File">bdchm:File</a></p>
 <div class="mermaid"> classDiagram
     class File
@@ -219,8 +224,14 @@ <h1 id="class-file">Class: File</h1>
 
       File : data_type
 
+      File : derived_from
+
+          File --&gt; File : derived_from
+
       File : description
 
+      File : file_location
+
       File : file_name
 
       File : file_size
@@ -231,7 +242,7 @@ <h1 id="class-file">Class: File</h1>
 
       File : identity
 
-      File : uri
+      File : md5sum
 
 
 </div>
@@ -272,12 +283,18 @@ <h2 id="slots">Slots</h2>
 <td>direct</td>
 </tr>
 <tr>
-<td><a href="../uri/">uri</a></td>
-<td>0..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
+<td><a href="../file_location/">file_location</a></td>
+<td>0..* <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
 <td>A unique identifier or url for identifying or locating the file</td>
 <td>direct</td>
 </tr>
 <tr>
+<td><a href="../md5sum/">md5sum</a></td>
+<td>0..1 <br/> <a href="../String/">String</a></td>
+<td>The 128-bit hash value expressed as a 32 digit hexadecimal number used as a f...</td>
+<td>direct</td>
+</tr>
+<tr>
 <td><a href="../data_type/">data_type</a></td>
 <td>0..1 <br/> <a href="../String/">String</a></td>
 <td>The nature or genre of the resource</td>
@@ -308,13 +325,38 @@ <h2 id="slots">Slots</h2>
 <td>direct</td>
 </tr>
 <tr>
+<td><a href="../derived_from/">derived_from</a></td>
+<td>0..1 <br/> <a href="./">File</a></td>
+<td>A File from which this File is derived</td>
+<td>direct</td>
+</tr>
+<tr>
 <td><a href="../id/">id</a></td>
 <td>1..1 <br/> <a href="../Uriorcurie/">Uriorcurie</a></td>
 <td>The 'logical' identifier of the entity within the system of record</td>
 <td><a href="../Entity/">Entity</a></td>
 </tr>
 </tbody>
 </table>
+<h2 id="usages">Usages</h2>
+<table>
+<thead>
+<tr>
+<th>used by</th>
+<th>used in</th>
+<th>type</th>
+<th>used</th>
+</tr>
+</thead>
+<tbody>
+<tr>
+<td><a href="./">File</a></td>
+<td><a href="../derived_from/">derived_from</a></td>
+<td>range</td>
+<td><a href="./">File</a></td>
+</tr>
+</tbody>
+</table>
 <h2 id="comments">Comments</h2>
 <ul>
 <li>This is taken largely from the <a href="https://gen3.biodatacatalyst.nhlbi.nih.gov/DD">Gen3 Core Metadata Collection</a> definition.</li>
@@ -354,7 +396,7 @@ <h2 id="linkml-source">LinkML Source</h2>
 <h3 id="direct">Direct</h3>
 <details>
 <pre><code class="language-yaml">name: File
-description: Abstract class for various kinds of files. Subclasses will be defined
+description: Abstract class for various kinds of files. Subclasses may be defined
   for specific file types.
 comments:
 - This is taken largely from the [Gen3 Core Metadata Collection](https://gen3.biodatacatalyst.nhlbi.nih.gov/DD)
@@ -388,14 +430,20 @@ <h3 id="direct">Direct</h3>
     from_schema: https://w3id.org/nhlbidatastage/bdchm
     rank: 1000
     range: integer
-  uri:
-    name: uri
+  file_location:
+    name: file_location
     description: A unique identifier or url for identifying or locating the file.
-    comments:
-    - Not included in the Gen3 Core Metadata or Dublin Core.
     from_schema: https://w3id.org/nhlbidatastage/bdchm
     rank: 1000
+    multivalued: true
     range: uriorcurie
+  md5sum:
+    name: md5sum
+    description: The 128-bit hash value expressed as a 32 digit hexadecimal number
+      used as a file's digital fingerprint.
+    from_schema: https://w3id.org/nhlbidatastage/bdchm
+    rank: 1000
+    range: string
   data_type:
     name: data_type
     description: The nature or genre of the resource. Recommended best practice is
@@ -434,13 +482,21 @@ <h3 id="direct">Direct</h3>
     description: A reference to the Participant to which this file relates.
     from_schema: https://w3id.org/nhlbidatastage/bdchm
     range: Participant
+  derived_from:
+    name: derived_from
+    description: A File from which this File is derived.  A derivation is a transformation
+      of an entity into another, an update of an entity resulting in a new one, or
+      the construction of a new entity based on a pre-existing entity.
+    from_schema: https://w3id.org/nhlbidatastage/bdchm
+    rank: 1000
+    range: File
 
 </code></pre>
 </details>
 <h3 id="induced">Induced</h3>
 <details>
 <pre><code class="language-yaml">name: File
-description: Abstract class for various kinds of files. Subclasses will be defined
+description: Abstract class for various kinds of files. Subclasses may be defined
   for specific file types.
 comments:
 - This is taken largely from the [Gen3 Core Metadata Collection](https://gen3.biodatacatalyst.nhlbi.nih.gov/DD)
@@ -480,18 +536,28 @@ <h3 id="induced">Induced</h3>
     domain_of:
     - File
     range: integer
-  uri:
-    name: uri
+  file_location:
+    name: file_location
     description: A unique identifier or url for identifying or locating the file.
-    comments:
-    - Not included in the Gen3 Core Metadata or Dublin Core.
     from_schema: https://w3id.org/nhlbidatastage/bdchm
     rank: 1000
-    alias: uri
+    multivalued: true
+    alias: file_location
     owner: File
     domain_of:
     - File
     range: uriorcurie
+  md5sum:
+    name: md5sum
+    description: The 128-bit hash value expressed as a 32 digit hexadecimal number
+      used as a file's digital fingerprint.
+    from_schema: https://w3id.org/nhlbidatastage/bdchm
+    rank: 1000
+    alias: md5sum
+    owner: File
+    domain_of:
+    - File
+    range: string
   data_type:
     name: data_type
     description: The nature or genre of the resource. Recommended best practice is
@@ -564,6 +630,18 @@ <h3 id="induced">Induced</h3>
     - ObservationSet
     - Observation
     range: Participant
+  derived_from:
+    name: derived_from
+    description: A File from which this File is derived.  A derivation is a transformation
+      of an entity into another, an update of an entity resulting in a new one, or
+      the construction of a new entity based on a pre-existing entity.
+    from_schema: https://w3id.org/nhlbidatastage/bdchm
+    rank: 1000
+    alias: derived_from
+    owner: File
+    domain_of:
+    - File
+    range: File
   identity:
     name: identity
     description: A 'business' identifier or accession number for the entity, typically