Adopt options to run audit-only

[AlexAxthelm]

Alternate to #32

Explictly pass a commands object as part of the JSON params, with audit, analysis, and reporting keys (all boolean), to determine which phases of the process run.

After this PR, the params object (usually passed via command line arg to the docker image) should have a top-level object commands:

"commands": {
  "audit": true,
  "analysis": false,
  "report": false
},
<rest of params>

In the above example, the audit would run (generating an audit file at $ANALYSIS_OUTPUT_DIR), but the actual analysis and interactive report generation phases would not.

By default, these commands are all true.

Depends on:

• Audit only workflow.pacta#106
• Command flow workflow.pacta.report#37

[github-actions]

Docker build status

commit_time	git_sha	image
2024-12-17T15:05:14Z	e298f99	ghcr.io/rmi-pacta/workflow.pacta.webapp:pr-33

[github-actions]

Report Links

commit_time	git_sha	config	report	summary	image
2024-12-17T15:05:14Z	e298f99	audit_2022Q4	Report		ghcr.io/rmi-pacta/workflow.pacta.webapp:pr-33
2024-12-17T15:05:14Z	e298f99	audit_2023Q4	Report		ghcr.io/rmi-pacta/workflow.pacta.webapp:pr-33
2024-12-17T15:05:14Z	e298f99	default_2022Q4	Report		ghcr.io/rmi-pacta/workflow.pacta.webapp:pr-33
2024-12-17T15:05:14Z	e298f99	default_2023Q4	Report		ghcr.io/rmi-pacta/workflow.pacta.webapp:pr-33
2024-12-17T15:05:14Z	e298f99	full_params_2022Q4	Report		ghcr.io/rmi-pacta/workflow.pacta.webapp:pr-33
2024-12-17T15:05:14Z	e298f99	full_params_2023Q4	Report		ghcr.io/rmi-pacta/workflow.pacta.webapp:pr-33

[AlexAxthelm]

@jdhoffa Marking as in review, but note that I still need to update DESCRIPTION after the dependency PRs are merged in.

[AlexAxthelm]

From CI:

files generated during "audit-only": https://github.com/RMI-PACTA/workflow.pacta.webapp/actions/runs/12375705345/job/34541327456#step:10:109
files from "run-everything: https://github.com/RMI-PACTA/workflow.pacta.webapp/actions/runs/12375705345/job/34541326995#step:10:109

[jdhoffa]

I will review this in January 😊
@AlexAxthelm please remind me in case I forget!