NaaVRE-cells

Setup

Cells repository

Repositories using this template publish cells to the Github image registry (ghcr.io) by default, using built-in authentication.

To use another registry, the following following actions secrets and variables must be set in the repository settings:

• variable REGISTRY_NAME (eg. https://index.docker.io/v1/ for Docker Hub)
• secret REGISTRY_PASSWORD
• secret REGISTRY_USERNAME

If using self-hosted runners, the following variables must be set (see QCDIS/choose-action-runner):

• variable PREFERRED_ACTIONS_RUNNER
• secret RUNNER_ACCESS_TOKEN

NaaVRE deployment

Set the following environment variables in the NaaVRE deployment:

• CELL_GITHUB=https://github.com/this-user/this-repo
• CELL_GITHUB_TOKEN=github_pat_... (Permissions: read access metadata; read and write access actions and code on the current repo)

If using another image image registry (e.g. Docker Hub):

• REGISTRY_URL=https://hub.docker.com/u/my-user