Merge pull request #49 from Psy-Fer/patch

add dot try on barcode summary
Psy-Fer · Sep 18, 2024 · 911016f · 911016f
2 parents c06452a + 8f7fb41
commit 911016f
Showing 1 changed file with 1 addition and 1 deletion.
diff --git a/src/basecaller.py b/src/basecaller.py
@@ -365,7 +365,7 @@ def get_reads(args, client, read_counter, sk, read_store):
                                         "barcode_front_id", "barcode_front_score", "barcode_front_refseq", "barcode_front_foundseq", "barcode_front_foundseq_length",
                                         "barcode_front_begin_index", "barcode_rear_id", "barcode_rear_score", "barcode_rear_refseq", "barcode_rear_foundseq", "barcode_rear_foundseq_length",
                                         "barcode_rear_end_index"]
-                            bc_sum_out = "\t".join([bcalled_read["parent_read_id"]]+[bcalled_read["read_id"]]+[str(call['metadata'][i]) for i in bc_keys])
+                            bc_sum_out = "\t".join([bcalled_read["parent_read_id"]]+[bcalled_read["read_id"]]+[str(call['metadata'].get(i, ".")) for i in bc_keys])
                             bcalled_read["bc_sum_out"] = bc_sum_out