Update auto3dseg README.md about testing (#312)

auto3dseg/README.md

@@ -2,7 +2,7 @@
 
 ## Template testing
 
-A unit test script is provided to evaluate the integrity of all algorithm templates in `auto3dseg/algorithm_templates`. This include a 2-epoch training and the inference of trained models on a single GPU ("cuda:0") in the testing process.
+A unit test script is provided to evaluate the integrity of all algorithm templates in `auto3dseg/algorithm_templates`. This includes a 2-epoch training and the inference of trained models on a single GPU ("cuda:0") in the testing process.
 
 
 ```
@@ -14,5 +14,28 @@ python auto3dseg/tests/test_gpu_customization.py
 
 ### Class/Folder naming convention
 
-- Folder name: name of the algorithm in lower cases
+- Folder name: name of the algorithm in lowercase
 - Class name: folder name with the first letter in upper case + "Algo". e.g. UnetAlgo, SegresnetAlgo, etc.
+
+## Testing with MONAI core
+
+Start a docker container:
+
+```bash
+docker run --ipc=host --net=host --gpus all -ti --rm projectmonai/monai
+```
+
+To test the github fork branch (assuming `my_test_branch` of `https://github.com/my_github/research-contributions.git`),
+run the following script:
+```bash
+cd /tmp/
+git clone --depth 1 --branch dev  https://github.com/project-monai/monai.git
+git clone --depth 1 --branch my_test_branch https://github.com/my_github/research-contributions.git
+cp -r research-contributions/auto3dseg/algorithm_templates/ monai/
+cd monai/
+export OMP_NUM_THREADS=4 MKL_NUM_THREADS=4 PROTOCOL_BUFFERS_PYTHON_IMPLEMENTATION=python
+MONAI_TESTING_ALGO_TEMPLATE=algorithm_templates python -m unittest -vvv tests.test_auto3dseg_ensemble
+MONAI_TESTING_ALGO_TEMPLATE=algorithm_templates python -m unittest -vvv tests.test_auto3dseg_hpo
+MONAI_TESTING_ALGO_TEMPLATE=algorithm_templates python -m unittest -vvv tests.test_integration_autorunner
+MONAI_TESTING_ALGO_TEMPLATE=algorithm_templates python -m unittest -vvv tests.test_integration_gpu_customization
+```