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Update example apps' test data path, patch hsdk in local env, and ensure correct MD SDK is used in dev env #671

Update example apps' test data path, patch hsdk in local env, and ensure correct MD SDK is used in dev env

Update example apps' test data path, patch hsdk in local env, and ensure correct MD SDK is used in dev env #671

Workflow file for this run

# This workflow will install Python dependencies, run tests and lint with a single version of Python
# For more information see: https://help.github.com/actions/language-and-framework-guides/using-python-with-github-actions
name: build
on:
push:
branches: [ main ]
pull_request:
branches: [ main ]
jobs:
test:
runs-on: ubuntu-latest
steps:
- uses: actions/checkout@v2
- name: Set up Python 3.8
uses: actions/setup-python@v2
with:
python-version: "3.8"
- name: Setup Dev Environment
run: |
pip install virtualenv
virtualenv .venv
source .venv/bin/activate
python3 -m pip install nvidia-cuda-runtime-cu12
./run setup
- name: Check formatting
run: |
source .venv/bin/activate
python3 -m pip install nvidia-cuda-runtime-cu12
python3 -c 'import sys; print(sys.executable)'
python3 -c 'import site; print(site.getsitepackages())'
python3 -m pip freeze
export CUDA_WHL_LIB_DIR=$(python3 -c 'import nvidia.cuda_runtime; print(nvidia.cuda_runtime.__path__[0])')/lib
export LD_LIBRARY_PATH="$CUDA_WHL_LIB_DIR:$LD_LIBRARY_PATH"
python3 -c 'from holoscan.core import *'
./run check -f
- name: Run Unit tests
run: |
source .venv/bin/activate
python3 -m pip install nvidia-cuda-runtime-cu12
export CUDA_WHL_LIB_DIR=$(python3 -c 'import nvidia.cuda_runtime; print(nvidia.cuda_runtime.__path__[0])')/lib
export LD_LIBRARY_PATH="$CUDA_WHL_LIB_DIR:$LD_LIBRARY_PATH"
./run test all unit
- name: Coverage
run: |
source .venv/bin/activate
python3 -m pip install nvidia-cuda-runtime-cu12
export CUDA_WHL_LIB_DIR=$(python3 -c 'import nvidia.cuda_runtime; print(nvidia.cuda_runtime.__path__[0])')/lib
export LD_LIBRARY_PATH="$CUDA_WHL_LIB_DIR:$LD_LIBRARY_PATH"
coverage xml
- name: Upload coverage
uses: codecov/codecov-action@v2
with:
fail_ci_if_error: false
files: ./coverage.xml