build: Test Models Against the Full Docker Stack

.github/workflows/docker-stack-test.yml

@@ -0,0 +1,150 @@
+name: Docker-Stack-Test
+
+on:
+  push:
+    branches:
+      - master
+      - develop
+      - Docker-Stack-Testing
+
+
+    tags:
+      - '*'
+
+  pull_request:
+
+  merge_group:
+
+  issue_comment:
+    types:
+      - created
+
+env:
+  R_LIBS_USER: /usr/local/lib/R/site-library
+  LC_ALL: en_US.UTF-8
+  NCPUS: 2
+  PGHOST: postgres
+  CI: true
+
+jobs:
+
+
+  # ----------------------------------------------------------------------
+  # DOCKER STACK TESTS
+  # ----------------------------------------------------------------------
+  Stack-Test:
+    if: github.event_name != 'issue_comment' || startsWith(github.event.comment.body, '/build')
+    runs-on: ubuntu-latest
+    env:
+      GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }}
+
+    strategy:
+      fail-fast: false
+      matrix:
+        name:
+            - sipnet_r136
+
+        include:
+          - name: sipnet_r136
+            modelID: "1000000014"
+            siteID: "772"
+            siteName: "Niwot Ridge Forest/LTER NWT1 (US-NR1)"
+            pftName: "temperate.deciduous"
+            metData: "AmerifluxLBL"
+            startDate: "2004/01/01"
+            endDate: "2004/12/31"
+
+    #Add more models below in the above format
+
+
+
+
+
+    services:
+      postgres:
+        image: mdillon/postgis:9.5
+        options: --health-cmd pg_isready --health-interval 10s --health-timeout 5s --health-retries 5
+
+    container: 
+      image: pecan/depends
+
+    steps:
+    # checkout source code
+    - name: work around https://github.com/actions/checkout/issues/766
+      run: git config --global --add safe.directory "$GITHUB_WORKSPACE"
+    - uses: actions/checkout@v3
+      with:
+        set-safe-directory: false
+
+    - name: Set up Docker Compose
+      run: |
+          sudo apt-get update
+          sudo apt-get -y install docker-compose
+    - name: Build and run containers
+      run: |
+        docker system prune --all --force
+        docker-compose up -d postgres
+        docker run --rm --network pecan_pecan pecan/db
+
+        docker-compose run  bety user guestuser guestuser "Guest User" [email protected] 4 4
+
+
+        docker-compose run  bety user carya illinois "Carya Demo User" [email protected] 1 1
+        docker run --rm --network pecan_pecan --volume pecan_pecan:/data --env FQDN=docker pecan/data:develop
+
+        cp docker/env.example .env
+        echo "COMPOSE_PROJECT_NAME=pecan" >> .env
+        echo "PECAN_VERSION=develop" >> .env
+
+        docker-compose up -d 
+
+
+
+    - name: Wait for services to start
+      run: |
+
+        docker-compose ps
+        sleep 20 # Adjust the duration as needed
+        docker-compose ps
+        sleep 20
+        docker-compose ps
+        sleep 20
+
+
+
+    - name: Display running containers
+      run: |
+        docker-compose ps
+        docker network ls 
+        docker network inspect bridge
+
+
+
+    # run tests against the full docker stack
+    - name: Run cURL command
+      run: |
+        curl -v -L -X POST -H "Host: pecan.localhost" \
+            -F 'hostname=docker' \
+            -F 'modelid=${{ matrix.modelID }}' \
+            -F 'sitegroupid=1' \
+            -F 'siteid=${{ matrix.siteID }}' \
+            -F 'sitename=${{ matrix.siteName }}' \
+            -F 'pft[]=${{ matrix.pftName }}' \
+            -F 'start=${{ matrix.startDate }}' \
+            -F 'end=${{ matrix.endDate }}' \
+            -F 'input_met=${{ matrix.metData }}' \
+            -F 'email=' \
+            -F 'notes=' \
+        'http://172.17.0.1/pecan/04-runpecan.php' 
+
+
+
+        curl -v -L -H "Host: pecan.localhost" \
+        'http://172.17.0.1/pecan/08-finished.php?workflowid=99000000001&hostname=docker&loglines=100'
+
+        sleep 200
+        curl -v -L -H "Host: pecan.localhost" \
+        'http://172.17.0.1/pecan/08-finished.php?workflowid=99000000001&hostname=docker&loglines=100'
+
+        curl -v -L -H "Host: pecan.localhost" \
+        'http://172.17.0.1/pecan/dataset.php?workflowid=99000000001&type=file&name=out/99000000001/sipnet.out'

docker-compose.yml

@@ -300,6 +300,7 @@ services:
   api:
     image: pecan/api:${PECAN_VERSION:-latest}
     user: "${UID:-1001}:${GID:-1001}"
+    restart: unless-stopped
     networks:
       - pecan
     environment: