Merge pull request #3281 from Sweetdevil144/develop

Fixed Bugs

.github/workflows/styler-actions.yml

@@ -17,10 +17,10 @@ jobs:
       - uses: actions/checkout@v4
         with:
           set-safe-directory: false
-      - uses: r-lib/actions/pr-fetch@master
+      - uses: r-lib/actions/pr-fetch@v2
         with:
           repo-token: ${{ secrets.GITHUB_TOKEN }}
-      - uses: r-lib/actions/setup-r@master
+      - uses: r-lib/actions/setup-r@v2
       - name: Install styler
         run: |
           Rscript -e 'install.packages("styler")'
@@ -39,7 +39,7 @@ jobs:
           git add \*.R
           git add \*.Rmd
           if [ "$(git diff --name-only --cached)" != "" ]; then  git commit -m 'automated syle update' ; fi
-      - uses: r-lib/actions/pr-push@master
+      - uses: r-lib/actions/pr-push@v2
         with:
           repo-token: ${{ secrets.GITHUB_TOKEN }}
 

models/sipnet/R/met2model.SIPNET.R

@@ -42,7 +42,7 @@ met2model.SIPNET <- function(in.path, in.prefix, outfolder, start_date, end_date
       PEcAn.logger::logger.severe(paste0("No files found matching ", in.prefix, "; cannot process data."))
     }
 
-    # This function is supposed to process netcdf files, so we'll search for files the the extension .nc and use those first.
+    # This function is supposed to process netcdf files, so we'll search for files with the extension .nc and use those first.
     nc_file = grep("\\.nc$", matching_files)
     if (length(nc_file) > 0) {
       if (grepl("\\.nc$", in.prefix)) {
@@ -54,7 +54,7 @@ met2model.SIPNET <- function(in.path, in.prefix, outfolder, start_date, end_date
     } else { # no .nc files found... it could be that the extension was left off, or some other problem
       PEcAn.logger::logger.warn("No files found with extension '.nc'.  Using the first file in the list below:")
       PEcAn.logger::logger.warn(matching_files)
-      in.prefix <- matching_files[i]
+      in.prefix <- matching_files[1]
     }
   } else { # Default behavior
     out.file <- paste(in.prefix, strptime(start_date, "%Y-%m-%d"),