Update CITATION.cff #6063
This file contains bidirectional Unicode text that may be interpreted or compiled differently than what appears below. To review, open the file in an editor that reveals hidden Unicode characters.
Learn more about bidirectional Unicode characters
| name: Docker GHA | |
| on: | |
| push: | |
| branches: | |
| - main | |
| - develop | |
| tags: | |
| - "v*.*.*" | |
| pull_request: | |
| merge_group: | |
| workflow_dispatch: | |
| inputs: | |
| r_version: | |
| description: 'R version to use' | |
| required: true | |
| type: choice | |
| default: "4.1" | |
| options: | |
| - 4.1 | |
| - 4.2 | |
| - 4.3 | |
| - 4.4 | |
| - devel | |
| jobs: | |
| # ---------------------------------------------------------------------- | |
| # Set R version. | |
| # This is a hack: We really just want a global env var here, but it seems | |
| # `env:` values can't be passed into a `jobs.<jobid>.with` context | |
| # (see https://github.com/actions/runner/issues/2372). | |
| # As an ugly workaround, we assign it to a job output instead. | |
| # ---------------------------------------------------------------------- | |
| rversion: | |
| runs-on: ubuntu-latest | |
| steps: | |
| - run: echo "null" | |
| outputs: | |
| R_VERSION: ${{ github.event.inputs.r_version || '4.1' }} | |
| # ---------------------------------------------------------------------- | |
| # depends image has all the dependencies installed | |
| # ---------------------------------------------------------------------- | |
| depends: | |
| permissions: | |
| packages: write | |
| needs: rversion | |
| uses: ./.github/workflows/docker-build-image.yml | |
| with: | |
| image-name: depends | |
| build-context: docker/depends | |
| dockerfile: docker/depends/Dockerfile | |
| r-version: ${{ needs.rversion.outputs.R_VERSION }} | |
| platforms: "linux/amd64" | |
| secrets: inherit | |
| # ---------------------------------------------------------------------- | |
| # base image has PEcAn compiled and installed, and depends on depends | |
| # ---------------------------------------------------------------------- | |
| base: | |
| needs: [rversion, depends] | |
| uses: ./.github/workflows/docker-build-image.yml | |
| with: | |
| image-name: base | |
| build-context: . | |
| dockerfile: docker/base/Dockerfile | |
| r-version: ${{ needs.rversion.outputs.R_VERSION }} | |
| parent-image: "depends" | |
| platforms: "linux/amd64" | |
| secrets: inherit | |
| # ---------------------------------------------------------------------- | |
| # models image has some python installed to run models, depends on base | |
| # ---------------------------------------------------------------------- | |
| models: | |
| needs: [rversion, base] | |
| uses: ./.github/workflows/docker-build-image.yml | |
| with: | |
| image-name: models | |
| build-context: docker/models | |
| dockerfile: docker/models/Dockerfile | |
| r-version: ${{ needs.rversion.outputs.R_VERSION }} | |
| parent-image: "base" | |
| secrets: inherit | |
| # ---------------------------------------------------------------------- | |
| # Next are images that have models installed | |
| # ---------------------------------------------------------------------- | |
| modelsbinary: | |
| needs: [rversion, models] | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| name: | |
| - basgra | |
| - biocro | |
| # - ed2_2.2.0 | |
| - ed2_git | |
| - maespa | |
| - sipnet | |
| include: | |
| - name: basgra | |
| CONTEXT: models/basgra | |
| DOCKERFILE: models/basgra/Dockerfile | |
| PLATFORM: "linux/amd64" | |
| MODEL: basgra | |
| VERSION: BASGRA_N_v1 | |
| - name: biocro | |
| CONTEXT: models/biocro | |
| DOCKERFILE: models/biocro/Dockerfile | |
| PLATFORM: "linux/amd64" | |
| MODEL: biocro | |
| VERSION: "0.95" | |
| # - name: ed2_2.2.0 | |
| # CONTEXT: models/ed | |
| # DOCKERFILE: models/ed/Dockerfile | |
| # PLATFORM: "linux/amd64" | |
| # MODEL: ed2 | |
| # VERSION: "2.2.0" | |
| - name: ed2_git | |
| CONTEXT: models/ed | |
| DOCKERFILE: models/ed/Dockerfile | |
| PLATFORM: "linux/amd64" | |
| MODEL: ed2 | |
| VERSION: "git" | |
| - name: maespa | |
| CONTEXT: models/maespa | |
| DOCKERFILE: models/maespa/Dockerfile | |
| PLATFORM: "linux/amd64" | |
| MODEL: maespa | |
| VERSION: "git" | |
| - name: sipnet | |
| CONTEXT: models/sipnet | |
| DOCKERFILE: models/sipnet/Dockerfile | |
| PLATFORM: "linux/amd64" | |
| MODEL: sipnet | |
| VERSION: "git" | |
| uses: ./.github/workflows/docker-build-image.yml | |
| with: | |
| image-name: model-${{ matrix.MODEL }}-${{ matrix.VERSION }} | |
| build-context: ${{ matrix.CONTEXT }} | |
| dockerfile: ${{ matrix.DOCKERFILE }} | |
| r-version: ${{ needs.rversion.outputs.R_VERSION }} | |
| parent-image: "models" | |
| model-version: ${{ matrix.VERSION }} | |
| platforms: ${{ matrix.PLATFORM }} | |
| secrets: inherit | |
| # ---------------------------------------------------------------------- | |
| # Next are images that depend on base image | |
| # ---------------------------------------------------------------------- | |
| baseplus: | |
| needs: [rversion, base] | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| name: | |
| - docs | |
| - executor | |
| - api | |
| include: | |
| - name: docs | |
| CONTEXT: . | |
| DOCKERFILE: docker/docs/Dockerfile | |
| PLATFORM: "linux/amd64" | |
| - name: executor | |
| CONTEXT: docker/executor | |
| DOCKERFILE: docker/executor/Dockerfile | |
| PLATFORM: "linux/amd64" | |
| - name: api | |
| CONTEXT: apps/api | |
| DOCKERFILE: apps/api/Dockerfile | |
| PLATFORM: "linux/amd64" | |
| uses: ./.github/workflows/docker-build-image.yml | |
| with: | |
| image-name: ${{ matrix.name }} | |
| build-context: ${{ matrix.CONTEXT }} | |
| dockerfile: ${{ matrix.DOCKERFILE }} | |
| r-version: ${{ needs.rversion.outputs.R_VERSION }} | |
| platforms: ${{ matrix.PLATFORM }} | |
| secrets: inherit | |
| # ---------------------------------------------------------------------- | |
| # Next are images that do not depend on either depends or base image | |
| # ---------------------------------------------------------------------- | |
| extras: | |
| needs: rversion | |
| strategy: | |
| fail-fast: false | |
| matrix: | |
| name: | |
| - web | |
| - shiny-dbsync | |
| - data | |
| - monitor | |
| - rstudio-nginx | |
| include: | |
| - name: web | |
| CONTEXT: . | |
| DOCKERFILE: docker/web/Dockerfile | |
| PLATFORM: "linux/amd64,linux/arm64" | |
| - name: shiny-dbsync | |
| CONTEXT: . | |
| DOCKERFILE: shiny/dbsync/Dockerfile | |
| PLATFORM: "linux/amd64" | |
| - name: data | |
| CONTEXT: docker/data | |
| DOCKERFILE: docker/data/Dockerfile | |
| PLATFORM: "linux/amd64,linux/arm64" | |
| - name: monitor | |
| CONTEXT: docker/monitor | |
| DOCKERFILE: docker/monitor/Dockerfile | |
| PLATFORM: "linux/amd64,linux/arm64" | |
| - name: rstudio-nginx | |
| CONTEXT: docker/rstudio-nginx | |
| DOCKERFILE: docker/rstudio-nginx/Dockerfile | |
| PLATFORM: "linux/amd64,linux/arm64" | |
| uses: ./.github/workflows/docker-build-image.yml | |
| with: | |
| image-name: ${{ matrix.name }} | |
| build-context: ${{ matrix.CONTEXT }} | |
| dockerfile: ${{ matrix.DOCKERFILE }} | |
| platforms: ${{ matrix.PLATFORM }} | |
| r-version: ${{ needs.rversion.outputs.R_VERSION }} |