[Integration Testing] PEcAn Docker Stack Run : Single Site, Single Model #23
Workflow file for this run
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name : Docker Stack Model Test | |
on : | |
pull_request: | |
# allow manual triggering | |
workflow_dispatch: | |
schedule: | |
# run Thursday 4:30 AM UTC | |
- cron: '30 4 * * 4' | |
jobs: | |
sipnet: | |
runs-on: ubuntu-latest | |
env: | |
GITHUB_PAT: ${{ secrets.GITHUB_TOKEN }} | |
steps: | |
- name: Free Disk Space (Ubuntu) | |
uses: jlumbroso/free-disk-space@main | |
with: | |
tool-cache: false | |
android: true | |
dotnet: true | |
haskell: true | |
large-packages: true | |
docker-images: false | |
swap-storage: true | |
- name: Checkout source code | |
uses: actions/checkout@v4 | |
- name: Set up Docker Compose | |
run: | | |
sudo apt-get update | |
sudo apt-get -y install docker-compose | |
- name: Add Volumes to Executor | |
run: | | |
cp docker-compose.dev.yml docker-compose.override.yml | |
sed -i'' '/R_library/d' docker-compose.override.yml | |
- name: Build Containers | |
run: | | |
cp docker/env.example .env | |
echo "COMPOSE_PROJECT_NAME=pecan" >> .env | |
echo "PECAN_VERSION=develop" >> .env | |
echo "UID=$(id -u)" >> .env | |
echo "GID=$(id -g)" >> .env | |
docker compose up --wait -d postgres | |
docker run --rm --network pecan_pecan pecan/db:ci | |
docker run --rm --network pecan_pecan --volume pecan_pecan:/data --env FQDN=docker pecan/data:develop | |
docker image rm pecan/db:ci pecan/data:develop | |
- name: Run required containers | |
run: | | |
docker compose up --wait -d sipnet executor monitor | |
- name: List running containers | |
run: | | |
sleep 50 | |
docker ps | |
# - name: Add models | |
# run: | | |
# docker compose cp scripts/add.util.sh postgres:/tmp/add.util.sh | |
# docker compose cp scripts/add.models.sh postgres:/tmp/add.models.sh | |
# docker compose exec postgres /tmp/add.models.sh | |
- name: Run SIPNET | |
run: | | |
docker compose exec --workdir /pecan/tests executor R CMD ../web/workflow.R --settings docker-ghaction.sipnet.xml |