tb-profiler docker container gatk

Pathogen-Genomics-Cymru · Jan 11, 2024 · f013273 · f013273
1 parent 84f137d
commit f013273
Showing 1 changed file with 4 additions and 3 deletions.
diff --git a/docker/Dockerfile.tbprofiler-0.9.8 b/docker/Dockerfile.tbprofiler-0.9.8
@@ -35,9 +35,10 @@ RUN apt-get update && apt-get install -y --no-install-recommends \
 
 # install tb-profiler via bioconda; install into 'base' conda env
 RUN micromamba install --yes --name base --channel conda-forge --channel bioconda  \
-    tb-profiler=${TBPROFILER_VER} && \
-    micromamba install -c bioconda -c conda-forge gatk4 && \
-    micromamba clean --all --yes
+    tb-profiler=${TBPROFILER_VER}
+
+RUN micromamba install -c bioconda -c conda-forge gatk4 
+RUN micromamba clean --all --yes
 
 # hardcode 'base' env bin into PATH, so conda env does not have to be "activated" at run time
 ENV PATH="/opt/conda/bin:${PATH}"