tests

tests/subworkflows/decontamination.nf.test

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+nextflow_workflow {
+
+    name "Test Workflow decontaminate"
+    script "subworkflows/decontamination.nf"
+    workflow "decontaminate"
+
+    test("Should run without failures") {
+
+        when {
+            params {
+                // define parameters here. Example:
+                // outdir = "tests/results"
+            }
+            workflow {
+                """
+                // define inputs of the workflow here. Example:
+                // input[0] = file("test-file.txt")
+                """
+            }
+        }
+
+        then {
+            assert workflow.success
+            assert snapshot(workflow.out).match()
+        }
+
+    }
+
+}

tests/workflows/clockwork.nf.test

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+nextflow_workflow {
+
+    name "Test Workflow clockwork"
+    script "workflows/clockwork.nf"
+    workflow "clockwork"
+
+    test("Should run without failures") {
+
+        when {
+            params {
+                // define parameters here. Example:
+                // outdir = "tests/results"
+            }
+            workflow {
+                """
+                // define inputs of the workflow here. Example:
+                // input[0] = file("test-file.txt")
+                """
+            }
+        }
+
+        then {
+            assert workflow.success
+            assert snapshot(workflow.out).match()
+        }
+
+    }
+
+}

tests/workflows/getversion.nf.test

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+nextflow_workflow {
+
+    name "Test Workflow vcfpredict"
+    script "workflows/getversion.nf"
+    workflow "vcfpredict"
+
+    test("Should run without failures") {
+
+        when {
+            params {
+                // define parameters here. Example:
+                // outdir = "tests/results"
+            }
+            workflow {
+                """
+                // define inputs of the workflow here. Example:
+                // input[0] = file("test-file.txt")
+                """
+            }
+        }
+
+        then {
+            assert workflow.success
+            assert snapshot(workflow.out).match()
+        }
+
+    }
+
+}

tests/workflows/preprocessing.nf.test

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+nextflow_workflow {
+
+    name "Test Workflow preprocessing"
+    script "workflows/preprocessing.nf"
+    workflow "preprocessing"
+
+    test("Should run without failures") {
+
+        when {
+            params {
+                // define parameters here. Example:
+                // outdir = "tests/results"
+            }
+            workflow {
+                """
+                // define inputs of the workflow here. Example:
+                // input[0] = file("test-file.txt")
+                """
+            }
+        }
+
+        then {
+            assert workflow.success
+            assert snapshot(workflow.out).match()
+        }
+
+    }
+
+}

tests/workflows/vcfpredict.nf.test

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+nextflow_workflow {
+
+    name "Test Workflow vcfpredict"
+    script "workflows/vcfpredict.nf"
+    workflow "vcfpredict"
+
+    test("Should run without failures") {
+
+        when {
+            params {
+                // define parameters here. Example:
+                // outdir = "tests/results"
+            }
+            workflow {
+                """
+                // define inputs of the workflow here. Example:
+                // input[0] = file("test-file.txt")
+                """
+            }
+        }
+
+        then {
+            assert workflow.success
+            assert snapshot(workflow.out).match()
+        }
+
+    }
+
+}