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@WhalleyT
WhalleyT committed Sep 3, 2024
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2 changes: 1 addition & 1 deletion docker/Dockerfile.tbtamr-0.9.9
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Expand Up @@ -27,7 +27,7 @@ RUN curl -Ls https://micro.mamba.pm/api/micromamba/linux-64/latest| tar -xvj bin
RUN micromamba install --yes --name base --channel conda-forge --channel bioconda jq requests xlsxwriter tbtamr
RUN micromamba install --yes --name base --channel conda-forge --channel bioconda gatk4
RUN micromamba install --yes --name base --channel conda-forge --channel bioconda samtools
RUN micromamba install --yes bioconda freebayes==1.3.6 #STDERR in current version of freebayes
RUN micromamba install --yes --name base --channel conda-forge --channel bioconda freebayes==1.3.6 #STDERR in current version of freebayes
RUN micromamba clean --all --yes

# hardcode 'base' env bin into PATH, so conda env does not have to be "activated" at run time
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