change flag name for label

nextflow.config

@@ -35,7 +35,7 @@ params {
   vcfmix = 'yes'
 
   resistance_profiler = "tb-profiler"
-  update_tbprofiler = "true"
+  update_tbprofiler = "yes"
 
   // path to singularity recipes directory (needed to strip software versions in getversion)
   sing_dir = "${baseDir}/singularity"
@@ -61,19 +61,35 @@ profiles {
         fixOwnership = true
         runOptions = "-u \$(id -u):\$(id -g)"
 
-        withLabel:getversion{
+        withLabel:run_local{
             executor = "local"
             container = null
         }
-
-        withLabel:afanc_parse{
-           executor = "local"
-           container = null
+
+        k8s {
+           computeResourceType = 'Job'
         }
 
+            process {
+           executor = 'k8s'
+           pod = [[securityContext:[fsGroupChangePolicy:'OnRootMismatch', runAsUser:1000, runAsGroup:1000, fsGroup:1000]], [automountServiceAccountToken:false], [nodeSelector:'hub.jupyter.org/node-purpose=user'], [volumeClaim:'cephfs-shared-team', mountPath:'/shared/team'], [volumeClaim:'cephfs-shared-ro-public', mountPath:'/shared/public', readOnly:true]]
+           queueSize = 30
+        }
+
         k8s {
+           runAsUser = 1000
            computeResourceType = 'Job'
         }
+
+
+    aws {
+    profile = "climb"
+
+    client {
+        endpoint = 'https://s3.climb.ac.uk'
+        s3PathStyleAccess = true
+        }
+     }
 
         //params specific to paths on the climb system
         params{