Merge pull request #106 from Pathogen-Genomics-Cymru/empty_vcfs #78
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| name: stub-run | |
| on: | |
| push: | |
| branches: | |
| - main | |
| paths-ignore: | |
| - '**/README.md' | |
| workflow_dispatch: | |
| jobs: | |
| build: | |
| runs-on: ubuntu-20.04 | |
| steps: | |
| - name: Set up Python 3.8 | |
| uses: actions/setup-python@v4 | |
| with: | |
| python-version: '3.8' | |
| - name: checkout playbook | |
| uses: actions/checkout@v3 | |
| with: | |
| repository: whalleyt/ansible.nextflow-container | |
| ref: lodestone | |
| - name: Run playbook | |
| uses: dawidd6/action-ansible-playbook@v2 | |
| with: | |
| playbook: playbook.yml | |
| options: | | |
| --verbose | |
| - uses: actions/checkout@v3 | |
| - name: Test stub run | |
| run: | | |
| nextflow run main.nf -stub -config testing.config |